PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020697270.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 731aa    MW: 83240.5 Da    PI: 5.0457
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020697270.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.35e-1133547242374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++cA+ v++gd+++a +lL +++++++p+gd+ qRla+yf+ +L+arla+++s +y+al +++++    s++l+a++++  +sP+  +s+ 
  XP_020697270.1 354 QTLLMQCAQTVAAGDHQRAYELLRQIRQHSNPHGDAWQRLAHYFADGLEARLAGTGSAIYNALVSKRKT---ASDVLKAYQIYLAASPLKMVSYH 445
                     689************************************************************999998...99********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                       Nq+I +a+ +++rvHi+Df+i  G+QWp++++ L++ p+gpp+lRiTg++ p++g   +e++eetg+rL+++Ae++++pf+++v +a++l+++
  XP_020697270.1 446 FSNQTIINAIGKATRVHILDFGIYFGFQWPPFMKMLSALPGGPPKLRITGIDVPQPGfrPEERIEETGRRLHHYAERFHIPFSYQV-LASKLDEV 539
                     ********************************************************9*****************************.699***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++e+L+++++E+l+Vn+v++l  l de+++++ +rd++L+ +++l+P v+v v     ++++ Fl+rf eal+++salfd+le+++pre+e+r+ 
  XP_020697270.1 540 KVEDLHLDEEEVLIVNCVFRLNCLGDETMNVDCPRDKFLNNIRKLNPAVFVNVTASGTLGAPFFLTRFREALYHFSALFDMLEVTMPREHEQRML 634
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vEr l g+++ n+++cega+r er et+++ + r  +aGF++ ++s++++k +k+ +r ++ + ++v+e+ ++l+lgW++r  + +SaW+
  XP_020697270.1 635 VERDLYGKSAINIISCEGADRLERPETYKQTQVRCLRAGFEQFHISSEITKMVKSRVRVHYHKDFSVDEDGKWLLLGWRGRIFICLSAWK 724
                     *************************************************************888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    
MMKNPMSNEA NDDFKYKDFF SVDEFLAQEE SLATNPDFGE PQLFNEQNYF DELPNSSYLS  60
HEVDPQGNSD VFSDLVLDYI GQMLMEEEMD DKFDMLESNP ALEATEKPFY EIIGEKYPPS  120
PDRPPIYSSP SSESSEGHRS HNFHSSGITG VNGFADNNQD PAYPESTELP HSRIYSYQTS  180
ISSDYSVASF LEGDADDFSD LLYKNLPASQ FEKGVAEAMK FLPNEVKLDA GDIGFESPHE  240
LKEDLASIEG RADDASGRRQ KGRHDINFDL EEQRSSKQSA ISYEEPTVSS EMFDMVLLCS  300
NQKFPEVITT IRETIQNEAA NKNSSEITEV KEPGKGRKSR SKKKQPKKEV VDLQTLLMQC  360
AQTVAAGDHQ RAYELLRQIR QHSNPHGDAW QRLAHYFADG LEARLAGTGS AIYNALVSKR  420
KTASDVLKAY QIYLAASPLK MVSYHFSNQT IINAIGKATR VHILDFGIYF GFQWPPFMKM  480
LSALPGGPPK LRITGIDVPQ PGFRPEERIE ETGRRLHHYA ERFHIPFSYQ VLASKLDEVK  540
VEDLHLDEEE VLIVNCVFRL NCLGDETMNV DCPRDKFLNN IRKLNPAVFV NVTASGTLGA  600
PFFLTRFREA LYHFSALFDM LEVTMPREHE QRMLVERDLY GKSAINIISC EGADRLERPE  660
TYKQTQVRCL RAGFEQFHIS SEITKMVKSR VRVHYHKDFS VDEDGKWLLL GWRGRIFICL  720
SAWKPSYYLS S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-155GRAS family protein