PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020697043.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 296aa    MW: 34565.8 Da    PI: 5.3884
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020697043.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.21.2e-141257449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    e+ + r +t++ R++g+ KKAeELSvLC++++ v  fs++ ++ ++
  XP_020697043.1 12 EDLRARRTTYTTRLKGLKKKAEELSVLCGIDIMVASFSPELNMIDF 57
                    566789********************************98777665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MGRAKLEIKY REDLRARRTT YTTRLKGLKK KAEELSVLCG IDIMVASFSP ELNMIDFWPE  60
RDTPKFSRIK ERYLGYIVCD YEGKGKIKQH SSFSLESFHE EKDAMKIKLQ EVRERLEFLQ  120
RQRQEEEERL QAEYNGSMAL QQFHQQAYPF PRSLSSHIAT DFEIPSQQEL SSHQQASPFA  180
QFLPPHEQTS FFFHEIFCHL ADFNMPMERD THSHERPFQN FQCPPPHEQP LLVSLSLPNE  240
QTSPFSQCLP PHLGSDSGTE DPLASWLPSD SNLWGHLDDF NCYDSLLLDY EASQLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-07MIKC_MADS family protein