PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020696902.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 845aa    MW: 92766.7 Da    PI: 6.2777
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020696902.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-182077457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_020696902.1 20 YVRYTPEQVEALERVYSECPKPSSMRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 77
                    6789****************************************************97 PP
2START1601.8e-501683742203
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+ell+d++ W +++++ ++l vi  g  g ++l+
  XP_020696902.1 168 IAEETLAEFLSKATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAELLKDRLNWYRDCRSHDVLTVIPAGngGNIELI 261
                     68999*****************************************************.***************************999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++ +++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p     +++vRae lpSg+li+p+++g+s + +v+hvdl++++++++lr+l+
  XP_020696902.1 262 YMQTYSPTTLASaRDFWTLRYTAGLEDGSLVICERSLTPSTGGPAgppAANFVRAEILPSGYLIRPCEGGGSMIYIVDHVDLDAWSVPEVLRPLY 356
                     ***************************************999998888*********************************************** PP

                     HHHHHHHHHHHHHHTXXX CS
           START 186 ksglaegaktwvatlqrq 203
                     +s  + ++k + ++l++ 
  XP_020696902.1 357 ESPKILAQKLTISALRHI 374
                     *********999999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    
MAMVVSAKEA GKQQMDAGKY VRYTPEQVEA LERVYSECPK PSSMRRQQLI RECPILANIE  60
PKQIKVWFQN RRCREKQRKE SSRLQTVNRK LTAMNKLLME ENDRLQKQVS QLVYENGYMR  120
QQVNTTSVAT TDTSCESVVT SGQHHQQQNP TPQHPPRDAN NPASLLAIAE ETLAEFLSKA  180
TGTAVEWVQM VGMKPGPDSI GIIAVSHNCS GVAARACGLV SLEPTKVAEL LKDRLNWYRD  240
CRSHDVLTVI PAGNGGNIEL IYMQTYSPTT LASARDFWTL RYTAGLEDGS LVICERSLTP  300
STGGPAGPPA ANFVRAEILP SGYLIRPCEG GGSMIYIVDH VDLDAWSVPE VLRPLYESPK  360
ILAQKLTISA LRHIRQISQE SNSEISYAGG RQPTVLRTFS QRMSRGFNDA VNGFPDDGWS  420
LMGSDGVEDV TIAINTFPNK LLGGHSSSSL FSSLGGGILC AKASMLLQNV PPALLVQFLR  480
EHRSEWADSG VDAYSASSLR ASPYAVPGLR VSNGFLGSHV IIPLAHTVEN EEVLEVVRLE  540
CPGFNQEDVL SRDMYLLQLC SGIDENAVGA CAQLVFAPID ESFADDAFLL PSGFRVIPLD  600
VKTDPPSATR TLDLASALEV GGGGTGRAPN DPVSYPSNSR SVLTIAFQFT FENHLRENVT  660
AMARQYVRSV VASVQRVAMA ISPSRLCNQL GMKHTAGSPE AHTLSLWISR SYRFHTGVEL  720
IRTDSQASET LKLLWHYSDA IMCCSLKASP LFTFANQAGL DLLETTLVAL QDISLEKILD  780
DTGRKVLCSE FPKIMQQGFA YLPAGICMSS MGRPVSYEQA IAWKVLNEED SPHCLAFMFV  840
NWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein