PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020696812.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 305aa MW: 33319.5 Da PI: 9.5252

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020696812.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.8e-18	143	197	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_020696812.2 143 RKKLRLSKEQSAFLEESFKQHSTLKPKQKSALAKQLNLRPRQVEVWFQNRRARTK 197 788899***********************************************98 PP
2	HD-ZIP_I/II	125.6	2.2e-40	143	232	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEesF+++++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++al+een+rL+ke +eLr +l XP_020696812.2 143 RKKLRLSKEQSAFLEESFKQHSTLKPKQKSALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEALTEENRRLQKELSELR-TL 232 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MELELRLGTS PARPLKKALV GGGGRRPTTG LKLGFCRAEG EKDAVEVRRG REVEERCSVD 60 SPAQLNLHLP AHHLPGYSRE RENTGLEVPA KELDVNLMPS ANSPSSSDRI NFSGGGGGEQ 120 GGAVAEERSS SRFSEEEENG GARKKLRLSK EQSAFLEESF KQHSTLKPKQ KSALAKQLNL 180 RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCEALTEENR RLQKELSELR TLKATHPFYN 240 QLPATTLSIC AACESPSKST EGAEAGGAAS ASRKLGPFTA LFAKVHFHAL TNPPPAPAHQ 300 PSAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	200	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	7e-67	HD-ZIP family protein