PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020696395.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 340aa MW: 37084.4 Da PI: 8.7526

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020696395.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135	2.3e-42	60	135	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+ dl+ +k y+ rhkvC +hsk+p v+v+gleqrfCqqCsrfh lsefD++krsCrrrLa+hnerrrk+ XP_020696395.1 60 RCQVEGCNLDLTGVKAYYCRHKVCGMHSKSPRVIVAGLEQRFCQQCSRFHLLSEFDQGKRSCRRRLAGHNERRRKP 135 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MESSSSAANG SGDSLNGLKF GKKIYFEDAG GNGSSSKSMA AVGKKGKGVA AVGGQQKAPR 60 CQVEGCNLDL TGVKAYYCRH KVCGMHSKSP RVIVAGLEQR FCQQCSRFHL LSEFDQGKRS 120 CRRRLAGHNE RRRKPPPGPL TSRCGRLSSF HEDNSRFRSF LMDFTYPRPL SASRDTWPSM 180 RSNDQTVNNQ WHGSFGTRVN QYPTFLSAPE QASGDSLAGV SDSSCALSLL STQPWGSTIV 240 AAAPPRNHEA PLISASTRID GGPMAQLNIA CSYMNSPWAY RDHASGSSSL EMGIKQLPDV 300 GNGHFSSELE LALQDNRQCP DELGHREVFD HDHSVMHWSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	2e-51	SBP family protein