PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020696160.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 458aa    MW: 52153.2 Da    PI: 7.5185
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020696160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.42.2e-92684452374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     v+lLl cA+av+ +d + a+ +L +l  ++s  g+p+qR++ayft +L ar + + s+ y+++ + +++    +ee++a+  ++ +sP+++f+h+
  XP_020696160.1  68 VRLLLLCADAVDRNDVSSATDFLRQLYRNVSLCGNPIQRMTAYFTDGLLARFLTKNSSFYSSIMADPSP----EEEFSAFASLYLASPYYQFAHF 158
                     579***************************************************9******99999997....788899999************* PP

            GRAS  97 taNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlva 183
                     taNqaI ea+e++      ++H+iDfd+s+GlQWp+L+q+L++++  ++p +l iTg+g     s eel+ t++rL++fA+ + +++fef+    
  XP_020696160.1 159 TANQAIFEAFEEDehwngGCLHVIDFDVSYGLQWPSLIQSLSDKAtnQKPINLLITGFGG----SVEELRDTEKRLSSFASGCrNISFEFQG--- 246
                     ***********9977777789*********************999844555*********....9***************98648*******... PP

            GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpr 277
                      rl   +  e++vk++ ++aVnlv+ lh+l  +s ++     ++L ++++l+P vv++ve+e ++ n++ Fl rf+e+l+y++a+fdsl+  lp+
  XP_020696160.1 247 -RLRGEKRPEIQVKKNATVAVNLVFYLHTLK-NSSNI----CSTLMQINTLNPSVVTLVEKEGSRgNHNGFLSRFTESLHYFAAMFDSLDDCLPA 335
                     .9999999**********************8.44444....459*******************999***************************** PP

            GRAS 278 eseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllr.........kvk.sdgyrveeesgslv.. 359
                      + er  +E+  lgrei+ +v  + +e +  r e+le+W++ +e+  F+ v++s++ ++qakl+l+          ++   g+r+ e+++ +   
  XP_020696160.1 336 RNIERLRIEKNHLGREIKHAVVVKDEEeKGCRYERLETWKAVMERYRFEGVRMSSRSVSQAKLILKikshcsamdDHGtATGFRIFERDEGMAis 430
                     *****************98776655543889********************************99743332222234445679998876666559 PP

            GRAS 360 lgWkdrpLvsvSaWr 374
                     lgW+d  L++++aWr
  XP_020696160.1 431 LGWQDTHLITATAWR 445
                     **************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    
MQGEVGEDLL SLRLSIGSAC HFELTKKRKR MDEPNDKNLM VLLQARDRMT RLGCNRPAMA  60
DDKGLQPVRL LLLCADAVDR NDVSSATDFL RQLYRNVSLC GNPIQRMTAY FTDGLLARFL  120
TKNSSFYSSI MADPSPEEEF SAFASLYLAS PYYQFAHFTA NQAIFEAFEE DEHWNGGCLH  180
VIDFDVSYGL QWPSLIQSLS DKATNQKPIN LLITGFGGSV EELRDTEKRL SSFASGCRNI  240
SFEFQGRLRG EKRPEIQVKK NATVAVNLVF YLHTLKNSSN ICSTLMQINT LNPSVVTLVE  300
KEGSRGNHNG FLSRFTESLH YFAAMFDSLD DCLPARNIER LRIEKNHLGR EIKHAVVVKD  360
EEEKGCRYER LETWKAVMER YRFEGVRMSS RSVSQAKLIL KIKSHCSAMD DHGTATGFRI  420
FERDEGMAIS LGWQDTHLIT ATAWRRSSEY QSKSFNLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.18e-54GRAS family protein