PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020695961.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 361aa MW: 39400.1 Da PI: 7.2245

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020695961.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl XP_020695961.1 14 KGPWTPEEDQKLLSYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52	1.6e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_020695961.1 67 RGKFSMQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MGRSPCCEKV GLKKGPWTPE EDQKLLSYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SMQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKQLAKMG 120 IDPVTHKPKS DALASADGHA RSTANLNHMA QWESARLEAE ARLVRESKLR SSAPPSNFPP 180 QNSPSPPPPV AMPTVASPSL DALRAWQGVW PKPAANSLVS SHIIDLESPT STLSFSENTL 240 PPRIQGMGTA DGSNRKEEDW KCLRRPGFSL DTEDAFANVE ATSWLTGSCS GGFAAGFTGM 300 LIGNTNKQNA TEGCDDSDNA GGSCVDVEEG EGEGEENKNY WNSILNLVNS SSPSNSPPAV 360 F

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MGRSPCCEKV GLKKGPWTPE EDQKLLSYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SMQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKQLAKMG  120
IDPVTHKPKS DALASADGHA RSTANLNHMA QWESARLEAE ARLVRESKLR SSAPPSNFPP  180
QNSPSPPPPV AMPTVASPSL DALRAWQGVW PKPAANSLVS SHIIDLESPT STLSFSENTL  240
PPRIQGMGTA DGSNRKEEDW KCLRRPGFSL DTEDAFANVE ATSWLTGSCS GGFAAGFTGM  300
LIGNTNKQNA TEGCDDSDNA GGSCVDVEEG EGEGEENKNY WNSILNLVNS SSPSNSPPAV  360
F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-114	MYB family protein