PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020695796.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 496aa MW: 54295.2 Da PI: 7.7283

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020695796.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.4	3e-33	215	273	1	60
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d++v+ei+Y+g+Hnh+k XP_020695796.1 215 VDDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCPVKKKVERSV-DGQVTEIIYKGKHNHQK 273 59**************************************.*************85 PP
2	WRKY	105.7	2.4e-33	388	446	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++dpk+v++tYeg+Hnh+ XP_020695796.1 388 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNAGCSVRKHVERASKDPKAVITTYEGKHNHD 446 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MAENIRTEAT GHTEAKRPSI SLPPRPSDES LFRLEPAEAS PNPMNLVSSF FSEDPESDCR 60 SFSQLLAGAI TLPETRTTAE AATGEGRGRG GGLNLGQSQA MNLLAGQSPF FMAQSDLSPG 120 GLLDFPAIFS SNLGQLGLAH QQASHSQLQM HLQSENPSSL FSASLSRSFP TVKMPKVLHM 180 PATTLDSNAY CSEVASASHS DQVPFPVPIV VDKPVDDGYN WRKYGQKQVK GSEYPRSYYK 240 CTQPNCPVKK KVERSVDGQV TEIIYKGKHN HQKPPSNKRG KEANMPNGSA ELNGHIGFLT 300 NSESHSQGNA ITGLSKRDRE SGNVAYDQLS GSSDGEEVGD HEGMDERDYG ESDQKKRNLE 360 TKLIESASHR TVTEARIIVQ TTSEVDLLDD GYRWRKYGQK VVKGNPHPRS YYKCTNAGCS 420 VRKHVERASK DPKAVITTYE GKHNHDVPAA RNSSHSTAAA ASNSSKPQNI HGRSDPLNNV 480 HRPIAVFQLK EEREIM

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MAENIRTEAT GHTEAKRPSI SLPPRPSDES LFRLEPAEAS PNPMNLVSSF FSEDPESDCR  60
SFSQLLAGAI TLPETRTTAE AATGEGRGRG GGLNLGQSQA MNLLAGQSPF FMAQSDLSPG  120
GLLDFPAIFS SNLGQLGLAH QQASHSQLQM HLQSENPSSL FSASLSRSFP TVKMPKVLHM  180
PATTLDSNAY CSEVASASHS DQVPFPVPIV VDKPVDDGYN WRKYGQKQVK GSEYPRSYYK  240
CTQPNCPVKK KVERSVDGQV TEIIYKGKHN HQKPPSNKRG KEANMPNGSA ELNGHIGFLT  300
NSESHSQGNA ITGLSKRDRE SGNVAYDQLS GSSDGEEVGD HEGMDERDYG ESDQKKRNLE  360
TKLIESASHR TVTEARIIVQ TTSEVDLLDD GYRWRKYGQK VVKGNPHPRS YYKCTNAGCS  420
VRKHVERASK DPKAVITTYE GKHNHDVPAA RNSSHSTAAA ASNSSKPQNI HGRSDPLNNV  480
HRPIAVFQLK EEREIM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13960.1	1e-116	WRKY family protein