PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020695795.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 498aa MW: 54554.6 Da PI: 7.7283

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020695795.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.4	3e-33	217	275	1	60
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d++v+ei+Y+g+Hnh+k XP_020695795.1 217 VDDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCPVKKKVERSV-DGQVTEIIYKGKHNHQK 275 59**************************************.*************85 PP
2	WRKY	105.7	2.4e-33	390	448	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++dpk+v++tYeg+Hnh+ XP_020695795.1 390 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNAGCSVRKHVERASKDPKAVITTYEGKHNHD 448 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MAENIRTEAT GHTEAKRPSI SLPPRPSDES LFRLEPAEAS PNPMNLVSSF FSEDPESDCR 60 SFSQLLAGAI TLPETRTTAE AATGEGRGRG GGLNLGQSQA MNLLAGQSPF FMAQSDLSPG 120 GLLDFPAIFS SNLMQGQLGL AHQQASHSQL QMHLQSENPS SLFSASLSRS FPTVKMPKVL 180 HMPATTLDSN AYCSEVASAS HSDQVPFPVP IVVDKPVDDG YNWRKYGQKQ VKGSEYPRSY 240 YKCTQPNCPV KKKVERSVDG QVTEIIYKGK HNHQKPPSNK RGKEANMPNG SAELNGHIGF 300 LTNSESHSQG NAITGLSKRD RESGNVAYDQ LSGSSDGEEV GDHEGMDERD YGESDQKKRN 360 LETKLIESAS HRTVTEARII VQTTSEVDLL DDGYRWRKYG QKVVKGNPHP RSYYKCTNAG 420 CSVRKHVERA SKDPKAVITT YEGKHNHDVP AARNSSHSTA AAASNSSKPQ NIHGRSDPLN 480 NVHRPIAVFQ LKEEREIM

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MAENIRTEAT GHTEAKRPSI SLPPRPSDES LFRLEPAEAS PNPMNLVSSF FSEDPESDCR  60
SFSQLLAGAI TLPETRTTAE AATGEGRGRG GGLNLGQSQA MNLLAGQSPF FMAQSDLSPG  120
GLLDFPAIFS SNLMQGQLGL AHQQASHSQL QMHLQSENPS SLFSASLSRS FPTVKMPKVL  180
HMPATTLDSN AYCSEVASAS HSDQVPFPVP IVVDKPVDDG YNWRKYGQKQ VKGSEYPRSY  240
YKCTQPNCPV KKKVERSVDG QVTEIIYKGK HNHQKPPSNK RGKEANMPNG SAELNGHIGF  300
LTNSESHSQG NAITGLSKRD RESGNVAYDQ LSGSSDGEEV GDHEGMDERD YGESDQKKRN  360
LETKLIESAS HRTVTEARII VQTTSEVDLL DDGYRWRKYG QKVVKGNPHP RSYYKCTNAG  420
CSVRKHVERA SKDPKAVITT YEGKHNHDVP AARNSSHSTA AAASNSSKPQ NIHGRSDPLN  480
NVHRPIAVFQ LKEEREIM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13960.1	1e-116	WRKY family protein