PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020695701.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | ARF | ||||||||
Protein Properties | Length: 666aa MW: 74526.2 Da PI: 7.7472 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.8 | 4.8e-24 | 113 | 214 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt+sd+++ g +++p+ +ae++ ++ + + ++d++g+ W++++iyr++++r++lt+GW++Fv a++L +gD+vvF +++ XP_020695701.1 113 FVKTLTQSDANNGGGFSVPRYCAETIfprldysATPPVQ--IVLVKDLHGKIWKFRHIYRGTPRRHLLTTGWSNFVGAKKLVAGDSVVFL--RTD 203 89****************************764333333..577789*******************************************..447 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_020695701.1 204 NGDLCVGIRRA 214 8888****996 PP | |||||||
2 | Auxin_resp | 113.3 | 2.3e-37 | 275 | 358 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++ +FevvY+Pra+++eFvvk++ v++a++v+++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+ XP_020695701.1 275 AATLAASGLPFEVVYYPRAAAPEFVVKASVVRAAMRVQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPGSPWRLLE 358 688999***************************************************************************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 666 aa Download sequence |
MKNIENCLDS QLWHACAGGM VQMPLVNSLV YYSPQGHSEH AKSSVEFDNS MQIPPMILCR 60 VKSVKYKADS VTDEVFTEIK LVPLKPHELD YDEDEGISLG INRSEIQEKP LYFVKTLTQS 120 DANNGGGFSV PRYCAETIFP RLDYSATPPV QIVLVKDLHG KIWKFRHIYR GTPRRHLLTT 180 GWSNFVGAKK LVAGDSVVFL RTDNGDLCVG IRRAKVGHDL SEGWNHKNCT FGGFGVYMMD 240 GDKRLLRDND NISGINSDPN SKGKGKLKVD SVMDAATLAA SGLPFEVVYY PRAAAPEFVV 300 KASVVRAAMR VQWCSGMRFK MAFETEDSSR ISWFMGTISS VQVADPIRWP GSPWRLLEVT 360 WDEPDLLQNV KRVNPWLVEL VSTMSAIHLE PFSPPRKKHR IAQHLDSPFD LQISSQSFVG 420 SPLIPSLLDG TTPAASIQGA RHIQHGTSLP ELHFRKLQPG LFYSGIHCFA RPPIIPTGLI 480 PPKSPIYEDD SNLLKIGCPP QSVGNECNKE SKANKPHIIL FGKQIFTEPQ LSLSLNSSLD 540 MNSDRSDSGI RRNGKGDGSP SDDRLPWHWD LKANDISPEI VQCKVFMESE NIGRTLDLSA 600 FDSYEEMYRR LTNMFGIEIS ELTSRIIYRD TAGAVKHPED EPFAKFMKVA RRLTISMDAR 660 CNNIGK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | ARF family protein |