PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020695697.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARF

Protein Properties

Length: 681aa MW: 76236 Da PI: 7.4375

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020695697.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.8	5e-24	113	214	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt+sd+++ g +++p+ +ae++ ++ + + ++d++g+ W++++iyr++++r++lt+GW++Fv a++L +gD+vvF +++ XP_020695697.1 113 FVKTLTQSDANNGGGFSVPRYCAETIfprldysATPPVQ--IVLVKDLHGKIWKFRHIYRGTPRRHLLTTGWSNFVGAKKLVAGDSVVFL--RTD 203 89**************************764333333..577789***************************************..447 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_020695697.1 204 NGDLCVGIRRA 214 8888**996 PP
2	Auxin_resp	113.3	2.3e-37	275	358	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++ +FevvY+Pra+++eFvvk++ v++a++v+++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+ XP_020695697.1 275 AATLAASGLPFEVVYYPRAAAPEFVVKASVVRAAMRVQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPGSPWRLLE 358 688999***************************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence
MKNIENCLDS QLWHACAGGM VQMPLVNSLV YYSPQGHSEH AKSSVEFDNS MQIPPMILCR 60 VKSVKYKADS VTDEVFTEIK LVPLKPHELD YDEDEGISLG INRSEIQEKP LYFVKTLTQS 120 DANNGGGFSV PRYCAETIFP RLDYSATPPV QIVLVKDLHG KIWKFRHIYR GTPRRHLLTT 180 GWSNFVGAKK LVAGDSVVFL RTDNGDLCVG IRRAKVGHDL SEGWNHKNCT FGGFGVYMMD 240 GDKRLLRDND NISGINSDPN SKGKGKLKVD SVMDAATLAA SGLPFEVVYY PRAAAPEFVV 300 KASVVRAAMR VQWCSGMRFK MAFETEDSSR ISWFMGTISS VQVADPIRWP GSPWRLLEVT 360 WDEPDLLQNV KRVNPWLVEL VSTMSAIHLE PFSPPRKKHR IAQHLDSPFD LQISSQSFVG 420 SPLIPSLLDG TTPAASIQGA RHIQHGTSLP ELHFRKLQPG LFYSGIHCFA RPPIIPTGLI 480 PPKSPIYEDD SNLLKIGCPP QSVGNECNKE SKANKPHIIL FGKQIFTEPQ LSLSLNSSLD 540 MNSDRSDSGI RRNGKGDGSP SDDRLPWHWD LKANDISPEI VQCKVFMESE NIGRTLDLSA 600 FDSYEEMYRR LTNMFGIEIS ELTSRIIYRD TAGAVKHPED EPFALQGDSQ YQWMRGATTL 660 ASNRRNLLLE GQLKKQFLPS L

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence

MKNIENCLDS QLWHACAGGM VQMPLVNSLV YYSPQGHSEH AKSSVEFDNS MQIPPMILCR  60
VKSVKYKADS VTDEVFTEIK LVPLKPHELD YDEDEGISLG INRSEIQEKP LYFVKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYSATPPV QIVLVKDLHG KIWKFRHIYR GTPRRHLLTT  180
GWSNFVGAKK LVAGDSVVFL RTDNGDLCVG IRRAKVGHDL SEGWNHKNCT FGGFGVYMMD  240
GDKRLLRDND NISGINSDPN SKGKGKLKVD SVMDAATLAA SGLPFEVVYY PRAAAPEFVV  300
KASVVRAAMR VQWCSGMRFK MAFETEDSSR ISWFMGTISS VQVADPIRWP GSPWRLLEVT  360
WDEPDLLQNV KRVNPWLVEL VSTMSAIHLE PFSPPRKKHR IAQHLDSPFD LQISSQSFVG  420
SPLIPSLLDG TTPAASIQGA RHIQHGTSLP ELHFRKLQPG LFYSGIHCFA RPPIIPTGLI  480
PPKSPIYEDD SNLLKIGCPP QSVGNECNKE SKANKPHIIL FGKQIFTEPQ LSLSLNSSLD  540
MNSDRSDSGI RRNGKGDGSP SDDRLPWHWD LKANDISPEI VQCKVFMESE NIGRTLDLSA  600
FDSYEEMYRR LTNMFGIEIS ELTSRIIYRD TAGAVKHPED EPFALQGDSQ YQWMRGATTL  660
ASNRRNLLLE GQLKKQFLPS L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein