PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020695561.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 643aa    MW: 69568.8 Da    PI: 5.3602
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020695561.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.86.1e-1262706262374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeav++++le+a++lL ++sel++p g++ qR+aayf eA++arl +s+ ++y+ lpp + +    ++ ++a+++f+ +sP++kfsh+
  XP_020695561.2 270 LTLLLQCAEAVAADNLEEANRLLLEISELSTPFGTSAQRVAAYFSEAMSARLISSCLGIYAPLPPIAVH---RQRLASAFQVFNGISPFVKFSHF 361
                     579**************************************************************9999...7889999**************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+e+ee+vHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+gs    s e+l++tg+rL++fAe+lg+pfef + va+++ +l++
  XP_020695561.2 362 TANQAIQEAFEREECVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGS----SLEALQATGKRLSDFAETLGLPFEFCP-VADKVGNLDP 451
                     *****************************************************....9**************************.7********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     ++L v+++Ea+aV++ +  h+l+d ++s ++    +L+l+++lsPkvv++veq+++  ++sFl+rf+ea++yysalfdsl a++++es+er+ vE
  XP_020695561.2 452 DRLGVSRREAVAVHWLH--HSLYDVTGSDTN----TLWLLQRLSPKVVTMVEQDLSQ-AGSFLARFVEAIHYYSALFDSLGASYGEESQERHIVE 539
                     ****************9..999999999999....********************98.899********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll+rei+nv++  g +r  + + +++Wre+l+++GF+ v+l  +a +qa lll +++sdgy++ ee+g+l lgWkd  L+++SaW+
  XP_020695561.2 540 QQLLSREIRNVLSVGGPARSGEIK-FGNWREKLSQSGFRGVSLAGNAHAQATLLLGMFPSDGYTLMEENGTLKLGWKDLCLLTASAWK 626
                     ******************888776.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    
MASTSCLLLP HPHDPSNASP SSINSQEDPL IFLQETSFTP LPAVKMARKR PASEIDLQPD  60
PPRRPPPPFS SDQLLLSDTP QSLALSSLPP LPPTAPAPSA LCSFSGLPLF TSEPNRTATG  120
PQNSTLDAED TSSSAWIDGI IRDLITSAAA NVSIPQIIHN VREVIFPCNP GLAAVLEFRL  180
RSLSSDSQTP VEPANKRREP SQCNLVPTWE EQQNHNNATI NPPNAAASVS SEEAAAAPPP  240
PPPPPTALAS AARKEELRQQ KRDEDGLHLL TLLLQCAEAV AADNLEEANR LLLEISELST  300
PFGTSAQRVA AYFSEAMSAR LISSCLGIYA PLPPIAVHRQ RLASAFQVFN GISPFVKFSH  360
FTANQAIQEA FEREECVHII DLDIMQGLQW PGLFHILASR PGGPPRVRLT GLGSSLEALQ  420
ATGKRLSDFA ETLGLPFEFC PVADKVGNLD PDRLGVSRRE AVAVHWLHHS LYDVTGSDTN  480
TLWLLQRLSP KVVTMVEQDL SQAGSFLARF VEAIHYYSAL FDSLGASYGE ESQERHIVEQ  540
QLLSREIRNV LSVGGPARSG EIKFGNWREK LSQSGFRGVS LAGNAHAQAT LLLGMFPSDG  600
YTLMEENGTL KLGWKDLCLL TASAWKPIQT PVTTCAGYGG VAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein