PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020695405.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 757aa    MW: 85662.3 Da    PI: 7.1791
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020695405.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS395.55.7e-1213827531374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+av+++d ++a++lL+++++ +sp gd +qRla++++ +L+ar+a+++s++y++l +++t+    ++ l+a+kl+  ++P+ k+sh
  XP_020695405.1 382 LRTLLIHCAQAVAADDRRNANELLKQIRQYSSPFGDGTQRLAHCLADGLEARMAGTGSQIYHSLVAKRTT---ATDILKAYKLYLSACPFKKISH 473
                     6789************************************************************999999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +  Nq+Il+a e+++rvHiiDf+i  G+QWp+L+q L+ Rp+gpp+lRiTg++ p++g   +e++eetg+rLa++Ae+++vpf++n+ +a+++e+
  XP_020695405.1 474 FFSNQTILNASEKASRVHIIDFGIYFGFQWPCLIQRLSLRPGGPPKLRITGIDVPQPGfrPTERIEETGKRLADYAESFNVPFQYNA-IASKWET 567
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L+++++E+l+Vn+ ++  +l+de+v ++s+r++vL+++++ +P+v+++   + +++++ F++rf eal ++s+lfd+le+++ re+ +r+
  XP_020695405.1 568 IRVEDLKIDEDEVLIVNCLYRFRNLVDETVVVDSPRNKVLSTIRKANPDVFIHGIVNGSYSAPFFVTRFREALFHFSSLFDMLETTVLREDAQRM 662
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +Er l+gre+ nv++ceg+er+er et+++W+ r  +aGF++++l+ +++k ak  +r ++ + + ++++s +l++gWk+r ++++S W+
  XP_020695405.1 663 LIERDLFGREALNVISCEGSERVERPETYKQWQVRNLRAGFTQLQLNPEIMKRAKDRVRSCYHRDFVIDQDSRWLLQGWKGRIIYAISTWK 753
                     **************************************************************999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    
MVMDRRTREL SGVDGLSCED FFSYQNPGGF KLNYPQPSVM DSSSLHGSKF DASQLFPVQN  60
NLHGHKYSVA DPNINQSNHA NYEVSGSGSV SDGNPPSTSS RSHEVDYPED SDFSDIVLSY  120
ISRILMEEDV DEKIYPFNQE KSALQAAEKP FYDILGQQYP PPSPGKSFLD ENSRLESPEE  180
TSSSYGVFSG ESSSSGVVDP SWIQDSSVRN QFTFSSSSVG SVDPSPVSSL LIESQPAWQF  240
KRGMEEAQKF LPSENKLAID VNVKNLALNY NLKEKGFTFD TEYKVEKEQL LPIVGSRARK  300
KPLSEDLDLQ EGRSIKQSAK SSDDAVRSEM FDNVLLCQGV KTYGVNKMNG YHMAMQNSAN  360
KSSQNGRKGR SKRQQKKDVV DLRTLLIHCA QAVAADDRRN ANELLKQIRQ YSSPFGDGTQ  420
RLAHCLADGL EARMAGTGSQ IYHSLVAKRT TATDILKAYK LYLSACPFKK ISHFFSNQTI  480
LNASEKASRV HIIDFGIYFG FQWPCLIQRL SLRPGGPPKL RITGIDVPQP GFRPTERIEE  540
TGKRLADYAE SFNVPFQYNA IASKWETIRV EDLKIDEDEV LIVNCLYRFR NLVDETVVVD  600
SPRNKVLSTI RKANPDVFIH GIVNGSYSAP FFVTRFREAL FHFSSLFDML ETTVLREDAQ  660
RMLIERDLFG REALNVISCE GSERVERPET YKQWQVRNLR AGFTQLQLNP EIMKRAKDRV  720
RSCYHRDFVI DQDSRWLLQG WKGRIIYAIS TWKPSDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein