PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020695158.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARF
Protein Properties Length: 664aa    MW: 74503.1 Da    PI: 7.1365
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020695158.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.7e-23132233199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ k++a+++      + k++ +++l+ +d++g++W++++iyr++++r++lt+GW+ F +a++L +gD ++F   + ++
  XP_020695158.1 132 FCKILTASDTSTHGGFSVLKRHADDClppldmS-KQPPTQELIAKDLHGQEWSFRHIYRGHPKRHLLTTGWSIFLNAKKLSTGDAFIFL--RGQD 223
                     99*****************************63.4445569************************************************..3489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++lvv+v+r+
  XP_020695158.1 224 GKLVVGVRRA 233
                     999*****97 PP
2Auxin_resp109.92.5e-36258339182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     a+ha++t+++F+v+Y+Pr+s+s+F+v++++++++ ++++++GmRf+m fe+ed +e r +Gt+++++d++p++Wp+SkW++ 
  XP_020695158.1 258 AMHAINTRTMFSVYYRPRTSSSDFIVPYHRYMDSANHSYCIGMRFRMTFEGEDGEEERHTGTIIAIEDAEPIKWPDSKWKCF 339
                     789*****************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    
MGSRGTARNL RSSCSKERVQ GSNDLLHTEL WRQCAGPLVS VPCVGEMVYY FPQGCIEQIE  60
AFASQHEHRS IPIYGLPSKI LCRVVNVLLQ AEKDTDEVFA QVTLLPEPEH EGDTNEMEAR  120
QSSVLNQQVF SFCKILTASD TSTHGGFSVL KRHADDCLPP LDMSKQPPTQ ELIAKDLHGQ  180
EWSFRHIYRG HPKRHLLTTG WSIFLNAKKL STGDAFIFLR GQDGKLVVGV RRARKLPTVA  240
STSVITTESM QIGILASAMH AINTRTMFSV YYRPRTSSSD FIVPYHRYMD SANHSYCIGM  300
RFRMTFEGED GEEERHTGTI IAIEDAEPIK WPDSKWKCFK VRWDQPSGIP RPERVCPWDV  360
TPFDAAVEPS EMAGTKRNRP CRSSLSPKSY DPNKNGFSKI CNEPAPKFQG LFQCQDGMAR  420
GLGSFSDVPG NLHSSLASQQ KHLPITSPEI RKEILVNNCS SHSPSSGCGT SGNPYLDRYR  480
SLEHANENYC KVPKIFGVPL IQNSSHGVLP HVATHNELIK QSMASYHAAL SPSYILDSDQ  540
FSEQSNSSKP SEFSGSGTSN DQSYATHTIP IRSCTKVRKH GSALGRSVDL SRFSGYDELI  600
YELDRMFAFQ GRLVDCCSSW QVIYTDDEGD TMLIGDYPWQ EFCAMVRKIF IYPHEEIDKL  660
HLSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.21e-177ARF family protein