PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020695079.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 352aa MW: 39171.3 Da PI: 7.0702

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020695079.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	75	120	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+q+G+ +W++Ia+ + gR++k+c++rw++ XP_020695079.1 75 RGHWRPAEDAKLRELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 120 899***************************.*********996 PP
2	Myb_DNA-binding	57.5	3e-18	127	170	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++T+eE+e+l+ a++++G++ W++Iar ++ gRt++ +k++w+ XP_020695079.1 127 KKAFTEEEEERLLSAHRLYGNK-WALIARFFP-GRTDNAVKNHWHV 170 679*****************.*****.*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MEFSPPPPSP LFPSEGDGKV NETGFPLEQQ QQLVLPGWGL EGLSGGSGSY GSEKNGQSEE 60 LEGEHESGQS KLCARGHWRP AEDAKLRELV AQYGPQNWNL IAENLEGRSG KSCRLRWFNQ 120 LDPRINKKAF TEEEEERLLS AHRLYGNKWA LIARFFPGRT DNAVKNHWHV IIARRHRELS 180 NAHRRRKPSN SISSSSAIAF DKGLQVHYCN NACIVESTIS SNRDESLSTG TDLSLNSSPY 240 RSFPGHGFFT RHIHQKKPQQ FQYLTGSDKK VATGGYGCSQ RPFDSESYFD HVHPLVLVPG 300 TDHSGYSDTN SEASATGSVI HKKGNAFILE EGDNDREKMS LPFIDFLGVG AT

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MEFSPPPPSP LFPSEGDGKV NETGFPLEQQ QQLVLPGWGL EGLSGGSGSY GSEKNGQSEE  60
LEGEHESGQS KLCARGHWRP AEDAKLRELV AQYGPQNWNL IAENLEGRSG KSCRLRWFNQ  120
LDPRINKKAF TEEEEERLLS AHRLYGNKWA LIARFFPGRT DNAVKNHWHV IIARRHRELS  180
NAHRRRKPSN SISSSSAIAF DKGLQVHYCN NACIVESTIS SNRDESLSTG TDLSLNSSPY  240
RSFPGHGFFT RHIHQKKPQQ FQYLTGSDKK VATGGYGCSQ RPFDSESYFD HVHPLVLVPG  300
TDHSGYSDTN SEASATGSVI HKKGNAFILE EGDNDREKMS LPFIDFLGVG AT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	2e-68	MYB family protein