PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020695019.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

LSD

Protein Properties

Length: 143aa MW: 14950.4 Da PI: 7.9177

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020695019.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.9	7.9e-14	27	51	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP+GA+sV+Ca+C++V XP_020695019.1 27 CSGCRNLLLYPLGATSVCCAVCNAV 51 ************************9 PP
2	zf-LSD1	46.8	4.7e-15	66	90	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV XP_020695019.1 66 CGGCHTLLMYIRGATSVQCSCCHTV 90 ************************9 PP
3	zf-LSD1	41.9	1.6e-13	104	128	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V XP_020695019.1 104 CGNCRMLLMYQYGARSVKCAVCNFV 128 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence
MPVPLAPYPS PPVPFTPPNG GQSQLVCSGC RNLLLYPLGA TSVCCAVCNA VTNVPPPGTE 60 MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLALDANQVA HVNCGNCRML LMYQYGARSV 120 KCAVCNFVTS VGALQSNEQK PSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	7e-64	LSD family protein