PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020694984.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 299aa    MW: 33294.2 Da    PI: 9.7054
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020694984.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.8e-13557148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                     +++WT+eE+  l+ +v+++G+g+W+tI r          R+  ++k++w++ +
   XP_020694984.1  5 KQKWTAEEEFALKAGVAKHGSGNWRTILRDPEfsgilFLRSNVDLKDKWRNMR 57
                     79***********************************55***********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MGAPKQKWTA EEEFALKAGV AKHGSGNWRT ILRDPEFSGI LFLRSNVDLK DKWRNMRVTA  60
NGWGSREKAR VALKKSRAIL KHDDNPLSLS TEVENVDDEL IDHKPPEISS EIVQITGSKR  120
PVSKMEDLII EAITCLKDPK GSNKTAIAIY IEDQHLTFPD FKRLLSVKLK EMTGWGKLIK  180
VKRKYRMAPS PAMVEGRKLK ASHLEVRQKE TSKEDRDDKS IAKLQVDAEL AWMRNMTAQE  240
AAAAAAQAIA EAEKAMAEAE EATREAEAAE ADAEAAKAFA EAAMLTLKNR NTTKLLKSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.12e-77MYB_related family protein