PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020694879.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 169aa MW: 19489 Da PI: 4.4199 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51 | 1.8e-16 | 2 | 38 | 11 | 47 |
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 v fskRr+g++KKAeELS+L +a++ ++ fs+ gkly XP_020694879.2 2 VCFSKRRKGLFKKAEELSILSGAKIGILTFSQAGKLY 38 89**********************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence |
MVCFSKRRKG LFKKAEELSI LSGAKIGILT FSQAGKLYCS DAEILNSLLC SQVGIPQDKE 60 IEDDWESAFA EDMEAEAHFC SQFDSYPEKE LYCSNTIADS LLRREFEISP EKEAGNHWEF 120 DFAEAMAGKN LPFWFNRVDA QIMSYEELQR FERAILEYAQ MQQAKTSYK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 3e-11 | M-type_MADS family protein |