PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020694779.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 724aa MW: 80992.1 Da PI: 6.1727

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020694779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.4	4.5e-07	118	140	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+++ + G C Gd+C+F+Hgp XP_020694779.1 118 VPCHYYVK-GACLKGDKCPFMHGP 140 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence
MDCSSGRNDN RSLTVEEEAI KQNTDCVYFL ASPLTCKKGS ECEYRHSEGA RLNPRDCRFW 60 LSGNCLNPKC LFRHPPLDGM VLSPKTTSAK IVASSQISSS GQLPMANPFT YNLSRNNVPC 120 HYYVKGACLK GDKCPFMHGP VSVGNPVAKQ NAKVSAQFTA QLETPEKDAW KKKDSSNRQN 180 FSSALNVGKE SADVLINGVP SSGIGVRAIE NANSHLVNKS IPVLVQPTNG LARSQTTYDP 240 VRSSSSYSSS QNLHVQPDGH LLHGGDGGDV FEVPSGVDYT ELESPLNHQV QSPGDHYQNG 300 QAAEEVFRDS SPGFDVLVDN VAGDTDYFHE RDDFRSGYIQ NRRSVNLGDD YDHYYSDYES 360 SGRLDGFPHD VVGEFQHYSK VQNGDKWDQH MTSSAYERIL DTPLLTERSS ARRRKSPDEM 420 DASDLRHRLT KQRRQDGYFS ATSTVRYREP KNTKENYHAH NSYKDQQSTI RSRLTGRITL 480 PKQLSPEIPL HLQDGRHRGR QPVRPAGYHG SLGQRLGWRS IQGSFANPRY LGRQQKTRDT 540 VDLVDFAGPR SLEELKGAKA DRNSQCQSTK YNHSTSSGSL KTARLRDSEA SIEFEGPKPL 600 SVLLKRKREA GSDNDAISGI NNERKKVVEI KAVRDLEEPR AGTVEENLIP TVDVQTSHET 660 EAKKAIEDEE EADYTEQKDG EYGYDTVEGG YYKIEEDEME HTDVDLDVEE DEDDFAKKIG 720 LIFS

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence

MDCSSGRNDN RSLTVEEEAI KQNTDCVYFL ASPLTCKKGS ECEYRHSEGA RLNPRDCRFW  60
LSGNCLNPKC LFRHPPLDGM VLSPKTTSAK IVASSQISSS GQLPMANPFT YNLSRNNVPC  120
HYYVKGACLK GDKCPFMHGP VSVGNPVAKQ NAKVSAQFTA QLETPEKDAW KKKDSSNRQN  180
FSSALNVGKE SADVLINGVP SSGIGVRAIE NANSHLVNKS IPVLVQPTNG LARSQTTYDP  240
VRSSSSYSSS QNLHVQPDGH LLHGGDGGDV FEVPSGVDYT ELESPLNHQV QSPGDHYQNG  300
QAAEEVFRDS SPGFDVLVDN VAGDTDYFHE RDDFRSGYIQ NRRSVNLGDD YDHYYSDYES  360
SGRLDGFPHD VVGEFQHYSK VQNGDKWDQH MTSSAYERIL DTPLLTERSS ARRRKSPDEM  420
DASDLRHRLT KQRRQDGYFS ATSTVRYREP KNTKENYHAH NSYKDQQSTI RSRLTGRITL  480
PKQLSPEIPL HLQDGRHRGR QPVRPAGYHG SLGQRLGWRS IQGSFANPRY LGRQQKTRDT  540
VDLVDFAGPR SLEELKGAKA DRNSQCQSTK YNHSTSSGSL KTARLRDSEA SIEFEGPKPL  600
SVLLKRKREA GSDNDAISGI NNERKKVVEI KAVRDLEEPR AGTVEENLIP TVDVQTSHET  660
EAKKAIEDEE EADYTEQKDG EYGYDTVEGG YYKIEEDEME HTDVDLDVEE DEDDFAKKIG  720
LIFS