PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020694732.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 624aa    MW: 70966.9 Da    PI: 6.388
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020694732.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS383.23.1e-1172526204374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     lLl+cAeavs+++l++a+ lL ++++ +sp gd+ qR+a+yf+++L+arla+ ++s+ y   pp+  s   +++ l+a++l++ +sP+ k+s + 
  XP_020694732.1 252 LLLQCAEAVSNNELHRANGLLIQIRQSSSPFGDAEQRIAHYFANGLEARLAGgTGSKNY-YYPPTLPS---MTDMLKAHQLYVAASPFKKISDFF 342
                     89**************************************************3333333.33444444...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     a q+Il+a e+  ++HiiDf+i +G+ Wp+++q L++ p+g+p+lRiTgv+ p++g   +e++eetg+rL+++A++++vpfe+++ +a ++e+l+
  XP_020694732.1 343 AHQTILNASEKTAKLHIIDFGIYHGFMWPCFMQRLSTLPGGSPRLRITGVDVPQPGfrPAERIEETGRRLTDYARQFKVPFEYHA-IACNWENLQ 436
                     *******************************************************9*****************************.6999***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +e+L+++p+E+laVn++++l +l de+vs +s+rd+vL+++++l+Pkv+v+   +  +n++ F++rf eal ++salfd+le+++ re+e+r+ +
  XP_020694732.1 437 PEDLSIEPDEVLAVNCMYRLRNLADETVSPDSPRDQVLRTIRKLNPKVFVLGVVNGTYNAPFFVTRFKEALFHFSALFDMLETNVEREDEQRRLL 531
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+++++rei nvv+ceg er+er e +++Wr r e+aG++++pl++ ++ +ak  ++k++ + + v+e+ ++l++gWk+r L ++SaW+
  XP_020694732.1 532 EKHCFEREILNVVSCEGLERVERPEPYKQWRLRNERAGLEQMPLDYVIVRKAKEKVKKCYHKDFVVDEDGKWLLQGWKGRILSALSAWK 620
                     ************************************************************889*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    
MKKNFRDSND TSNLKSFSSD ETSMQNPFSL PLWKSLGGES HEDSEIFSDI VLSYISQILM  60
EEDGDEKVDM LQEHPALLAA EKGFLDILCE TQSSSSSPSS SDHRTPTSNL SCYNSSDDSL  120
SPQGRDPNVS DVLGEGTGLR SWHYNIGIEQ PSHFLPNHNK LAAASSPATT STTRKNATHF  180
SDNDLEAEQG RTFKHSALYF DSDVPPEMFD FLLHKDCKQE KPAEANCNSN ANRKSRRKKK  240
LEKTDSVDLN FLLLQCAEAV SNNELHRANG LLIQIRQSSS PFGDAEQRIA HYFANGLEAR  300
LAGGTGSKNY YYPPTLPSMT DMLKAHQLYV AASPFKKISD FFAHQTILNA SEKTAKLHII  360
DFGIYHGFMW PCFMQRLSTL PGGSPRLRIT GVDVPQPGFR PAERIEETGR RLTDYARQFK  420
VPFEYHAIAC NWENLQPEDL SIEPDEVLAV NCMYRLRNLA DETVSPDSPR DQVLRTIRKL  480
NPKVFVLGVV NGTYNAPFFV TRFKEALFHF SALFDMLETN VEREDEQRRL LEKHCFEREI  540
LNVVSCEGLE RVERPEPYKQ WRLRNERAGL EQMPLDYVIV RKAKEKVKKC YHKDFVVDED  600
GKWLLQGWKG RILSALSAWK ARDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241RRKKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-151GRAS family protein