PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020694694.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 253aa MW: 29237 Da PI: 10.2079

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020694694.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.8	7e-15	16	61	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+++G+ +W+ Ia+ + +R++k+c++rw++ XP_020694694.1 16 RGHWRPAEDAKLTELVTKFGPQNWNFIAENLE-RRSGKSCRLRWFNQ 61 899***************************.*********996 PP
2	Myb_DNA-binding	56	8.9e-18	68	111	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++T+ E+e+l+ a++ +G++ W++Ia++++ gRt++ +k++w+ XP_020694694.1 68 RKAFTEAEEEKLLAAHHDYGNK-WALIAKYFP-GRTDNAVKNHWHV 111 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MESRDKERKQ SKLCTRGHWR PAEDAKLTEL VTKFGPQNWN FIAENLERRS GKSCRLRWFN 60 QLDPKINRKA FTEAEEEKLL AAHHDYGNKW ALIAKYFPGR TDNAVKNHWH VIMARKQREQ 120 YSSYRKRTLS SSSSSSGWSV SIATNLPKKN IKGFFFSSHK EKAINFSSGY TRKGYYQKLG 180 NPFCALSIDQ CTFSDSNSVA SAPELAERQG RSNGSICMRE EHENKKINLP FFDFLGVEEA 240 HRKLLMADSN KEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17800.1	1e-51	MYB family protein