PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020694614.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 497aa MW: 55616.7 Da PI: 8.3998

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020694614.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.7	3.7e-17	308	354	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RRdriN+++ L++l+P++ +K +Ka++L +A+eY+ksLq XP_020694614.2 308 VHNLSERKRRDRINEKMKALQDLIPHC-----TKSDKASMLDEAIEYLKSLQ 354 6************************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MEEHSRSYQN YLAATNQKRT TGPDQEFTEL QWKNGNVLMH SSTPRRCPTS ITEVKEDPKP 60 LGNSTPQSSA MEDEIASLFQ YPPYEYLEKE FGCDFLCDFP NPQTLITTDK SNKSINNEGN 120 AIPRLNLPHN QNRLSPPKSY VHGSAQQYVC PENSNVIDFS HLSKPGKIGL SNKLQKKIHS 180 AGGESSSMMT TESSICGSNQ VQNCVNLTNS LNNKTTTGLP PKKFKKCLER SFLSERVRTD 240 TFEVTGTSSS GGSGFSIRAT PQEMNNQSYK RKGVEMEESC SLSEEGDYES ADGKKPVQRS 300 RRTRAAEVHN LSERKRRDRI NEKMKALQDL IPHCTKSDKA SMLDEAIEYL KSLQQQVQLM 360 WMGSGMATMM FPSIQNFMAQ MSMGIGRGPM PTLNNLVQLP RVPLVNQPMP SVVAANQMPM 420 CPQPFSHLRF PNQMNNSQMP ESFPPHLGFH HLQPPPQAMN LYTYGSHLAQ QNQMGAINRS 480 SNLPTDGLPP DNFQNGK

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MEEHSRSYQN YLAATNQKRT TGPDQEFTEL QWKNGNVLMH SSTPRRCPTS ITEVKEDPKP  60
LGNSTPQSSA MEDEIASLFQ YPPYEYLEKE FGCDFLCDFP NPQTLITTDK SNKSINNEGN  120
AIPRLNLPHN QNRLSPPKSY VHGSAQQYVC PENSNVIDFS HLSKPGKIGL SNKLQKKIHS  180
AGGESSSMMT TESSICGSNQ VQNCVNLTNS LNNKTTTGLP PKKFKKCLER SFLSERVRTD  240
TFEVTGTSSS GGSGFSIRAT PQEMNNQSYK RKGVEMEESC SLSEEGDYES ADGKKPVQRS  300
RRTRAAEVHN LSERKRRDRI NEKMKALQDL IPHCTKSDKA SMLDEAIEYL KSLQQQVQLM  360
WMGSGMATMM FPSIQNFMAQ MSMGIGRGPM PTLNNLVQLP RVPLVNQPMP SVVAANQMPM  420
CPQPFSHLRF PNQMNNSQMP ESFPPHLGFH HLQPPPQAMN LYTYGSHLAQ QNQMGAINRS  480
SNLPTDGLPP DNFQNGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	313	318	ERKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	2e-34	bHLH family protein