PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020694526.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 25532.9 Da    PI: 5.4727
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020694526.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.82.2e-261059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +i+n + rqvtfskRr+g++KKA+EL +LCdaev +iifsstgkl+ +ss
  XP_020694526.1 10 KIDNATARQVTFSKRRKGLFKKAQELAILCDAEVGLIIFSSTGKLFQFSS 59
                    69**********************************************96 PP
2K-box53.31.2e-18931722099
           K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + a+L+k+  +L  ++R+l Ge++e+L++++Lq++e+ Le +l+++ +kK++ ++eqi++lq+k  +l een +Lr+++ 
  XP_020694526.1  93 DGARLNKQAAELTIQLRNLRGENIENLDIEQLQKIESTLECGLSRVLEKKEQKIVEQINDLQQKGLKLIEENARLRNQIS 172
                     5689*************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MAREKIKIRK IDNATARQVT FSKRRKGLFK KAQELAILCD AEVGLIIFSS TGKLFQFSSS  60
SMKEIIEKHS LQSKNIPRVD QPSLVLQLDN SDDGARLNKQ AAELTIQLRN LRGENIENLD  120
IEQLQKIEST LECGLSRVLE KKEQKIVEQI NDLQQKGLKL IEENARLRNQ ISALHVETTW  180
ESVAGNTDPE IAENAVIEDG QSSECVSNIS HLGGSQDLNE SADPSLKLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.19e-86MIKC_MADS family protein