PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020694398.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 594aa    MW: 63502.8 Da    PI: 7.2743
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020694398.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.81.7e-1062225942374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ Ll+ A+a+++g++e a+a La l+ +a+p+gdp qRl+a+++ AL +r++   ++ ++ ++        s+e+ aa +l++e+sP++k++ +
  XP_020694398.1 222 RQMLLDTATAITEGNQETATANLAVLKRTANPRGDPEQRLTAMMVAALVSRINPPAPGSSHPVADV-----CSAEHQAASHLLYEASPCFKLGLM 311
                     689***************************************************666655443333.....367899999*************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     +aN aIlea++ + ++Hi+Dfdi+qG Q ++L++a+++R        +pp ++iT v + + +++++l+ +g+rLak+Ae+ gv ++fn+ v +r
  XP_020694398.1 312 AANLAILEATKDNPKIHILDFDIGQGSQLASLIHAFSERHrqrspaLPPPCIKITSVCPLQGNDTNNLRIVGDRLAKLAESRGVGLRFNI-VNSR 405
                     **************************************996554444499*********9999**************************9.799* PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     +++l+  +L ++pgEalaVn+++ l r+ desvs++++rde+L+ vkslsP+vv++veqe++ n+++F++rf+ea+ ++ al++sl+a++ res 
  XP_020694398.1 406 TQELNQTTLLCEPGEALAVNFAFFLSRVADESVSTANPRDELLRRVKSLSPRVVTLVEQEMNGNTAPFATRFTEACAHFGALLESLDATATREST 500
                     *********************************************************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     er+ vE+  l+r++ n +a ega+r+er+e ++kWr+r+++aG++pvpl++ + + +kl l+    + g++++ee +++  gW++r L+++SaWr
  XP_020694398.1 501 ERARVEAC-LARKAANSIAREGADRVERCELYGKWRARMGMAGLNPVPLGSIVSEPVKLRLSSLRnNPGFTIKEEAAWVGCGWMGRVLTVASAWR 594
                     ******87.******************************************************9999***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    
MASGFPGRDL RGGFGFGAGS AVQMQYQQRS DGGAAIGAAG LLKRSLTEME RQQQMQHAIY  60
LRSVKQKTHF ALPSPVSHIS AADLSAASTT TTSSILSSLS SASASIPFVG QGIPNSTTWS  120
FQATFADAEI DSEKKSSMTT RLLELERQLL DDEEEELSIS GSAVTSNEWS ETMEKLMSPP  180
PPPPPIAAVV NLHPPSPSPT TSSTSSSGSS SSCTPSSATP SRQMLLDTAT AITEGNQETA  240
TANLAVLKRT ANPRGDPEQR LTAMMVAALV SRINPPAPGS SHPVADVCSA EHQAASHLLY  300
EASPCFKLGL MAANLAILEA TKDNPKIHIL DFDIGQGSQL ASLIHAFSER HRQRSPALPP  360
PCIKITSVCP LQGNDTNNLR IVGDRLAKLA ESRGVGLRFN IVNSRTQELN QTTLLCEPGE  420
ALAVNFAFFL SRVADESVST ANPRDELLRR VKSLSPRVVT LVEQEMNGNT APFATRFTEA  480
CAHFGALLES LDATATREST ERARVEACLA RKAANSIARE GADRVERCEL YGKWRARMGM  540
AGLNPVPLGS IVSEPVKLRL SSLRNNPGFT IKEEAAWVGC GWMGRVLTVA SAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-116GRAS family protein