PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020694380.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ERF
Protein Properties Length: 377aa    MW: 42334.3 Da    PI: 4.72
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020694380.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.62.3e-21118167255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++ +g+W+AeIrdp++     r++lg+f+t+eeAa+a++aa+++++g
  XP_020694380.1 118 QYRGIRQRP-WGKWAAEIRDPRK---GERVWLGTFDTPEEAARAYDAAARRIRG 167
                     69*******.**********954...3*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    
MCGGAIISDF IATARPQRVT ANTLWPDLRK KKKGGRKIRS AEIEDDFEAD FQEFEDETEV  60
SEVVDEYDED ELIELKPYAF RQNGTPLSRG IKESSIIGKC PQFDGPAEKS AKRKRKNQYR  120
GIRQRPWGKW AAEIRDPRKG ERVWLGTFDT PEEAARAYDA AARRIRGKKA KVNFPDEAPK  180
AVPNQVKLSS PKTKKPNLSK EVNFNQVFGF PKNAYYDVNS SPGLGKEEPL KLEPASSSPA  240
LKAFSPPEEV MNFLSEQESN SLNSSDFGWD HDSNMPEITS IPPSIFEDHE SGFLEESAPK  300
KKLKNNYGEV VSADEDAAMK LSEELSAFES YMKFGPFLEG GSDLCFDFLL GSDMTQDGIN  360
FMNLWSFEDV PMSGSVF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.17e-37ERF family protein