PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020694342.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | GRAS | ||||||||
Protein Properties | Length: 538aa MW: 60166.1 Da PI: 6.3118 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 446.6 | 1.7e-136 | 169 | 537 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++ L++cA+av+++dl +a+ l+++l++++s +g+p+qRl ay++e+L arla++++++ykal+++e + sse l+++++++ev+P++kf+++ XP_020694342.1 169 KKGLIACARAVEDDDLMMAELLMTELRQMVSVSGEPIQRLGAYLLEGLIARLASTGTSIYKALKCKEPT---SSELLSYMHILYEVCPYFKFGYF 260 6789****************************************************************9...9********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN aI ea++ge++vHiiDf+i qG QW++L+qaLa+Rp+gpp++RiTg++++ s+ + + l+ +g+rL+ +A++++vpfef++ + +++ XP_020694342.1 261 SANGAIAEALKGENAVHIIDFQIAQGSQWISLIQALAARPGGPPRVRITGIDDSISEyaRGTGLHLVGQRLSCLAQSCNVPFEFHA-APLPGDKI 354 *****************************************************87778899*************************.899***** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++e+L v+pgEalaVn+++qlh+++desvs+e++rd++L++vkslsPkvv++veqe+++n+++F+ rfle+l+yy+a+f+s++a lpr+++eri+ XP_020694342.1 355 HVEHLFVHPGEALAVNFAYQLHHMPDESVSTENHRDRILRMVKSLSPKVVTLVEQESNTNTAPFFPRFLETLDYYTAIFESIDAVLPRDHKERIS 449 *********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 vE+++l+r+ivnv+acegaer+erhe l+kW++r+++aGF+p+pls ++++++k+ll+++ + y++e+++g+l+lgWk+r L + +aW XP_020694342.1 450 VEQHCLARDIVNVIACEGAERVERHELLGKWKSRFRMAGFTPYPLSPFVNATIKSLLENYC-EHYKLEDRDGALYLGWKNRVLSVSCAW 537 ************************************************************9.55************************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence |
MSMQASKKYK NFDKSQQFYM NSSNSARESE SHYPPQKHQF VNHLCSNDTS GSRNSPHQAS 60 DIHYCTLESS SVAGSYGIRQ SPSISLSSTT GSSVSLHDSL SESTYGSPAS VSCLTEDPND 120 LKHKMRELET AMLGSEMDNG DSFETTFDRQ LFLEPDKWKL LEIARGDLKK GLIACARAVE 180 DDDLMMAELL MTELRQMVSV SGEPIQRLGA YLLEGLIARL ASTGTSIYKA LKCKEPTSSE 240 LLSYMHILYE VCPYFKFGYF SANGAIAEAL KGENAVHIID FQIAQGSQWI SLIQALAARP 300 GGPPRVRITG IDDSISEYAR GTGLHLVGQR LSCLAQSCNV PFEFHAAPLP GDKIHVEHLF 360 VHPGEALAVN FAYQLHHMPD ESVSTENHRD RILRMVKSLS PKVVTLVEQE SNTNTAPFFP 420 RFLETLDYYT AIFESIDAVL PRDHKERISV EQHCLARDIV NVIACEGAER VERHELLGKW 480 KSRFRMAGFT PYPLSPFVNA TIKSLLENYC EHYKLEDRDG ALYLGWKNRV LSVSCAWI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.1 | 0.0 | GRAS family protein |