PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020694275.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 469aa MW: 53629.7 Da PI: 6.868

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020694275.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.9	1.3e-06	7	31	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC ++r G C++ +C+FaHg+ XP_020694275.1 7 YKTKLCLLYQR-GRCPR-QNCSFAHGE 31 9********.*.*****96 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MLGRKMYKTK LCLLYQRGRC PRQNCSFAHG EVELRRFGGS FNGRRDYRSS DLRDKLDRRQ 60 SPTRRYSPGR DGRGYQTFRS HKTVSHDRGS SLSRSPIRRS ERRPKKKRSV DGESDISESH 120 KLSDGVEDTR KENNISSFDE KVIYEEKLRE AKSDIEKLED HKSHLEIFLE KKFEEAQKLS 180 SKIEDLEMQL NREQEDCKRI NSRIDKFFKA YGRYIKAQEE LKRSQSRFQK LGDQLGLDIS 240 KLGANEEDSS LNILSDGEPN GDFQESTPND VMHRGSSLKK RSLVHTEAID EVKYGYVSKK 300 SKHSATLSKP DKLSRSEGLS FSAEDATKDI ETIKLNQEKK DLPLSLLDGY KRNRGKFSPK 360 FSSLAKNRSS DAERVLPHTS MAANAIDELI EDIEIDEKSD GMVAVAAPNE NGTLDNKISS 420 SYLPPLPPPV NQNVYKQYEG DDEDVDVDVE KVDSEMIDID LNGEVDIEQ

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MLGRKMYKTK LCLLYQRGRC PRQNCSFAHG EVELRRFGGS FNGRRDYRSS DLRDKLDRRQ  60
SPTRRYSPGR DGRGYQTFRS HKTVSHDRGS SLSRSPIRRS ERRPKKKRSV DGESDISESH  120
KLSDGVEDTR KENNISSFDE KVIYEEKLRE AKSDIEKLED HKSHLEIFLE KKFEEAQKLS  180
SKIEDLEMQL NREQEDCKRI NSRIDKFFKA YGRYIKAQEE LKRSQSRFQK LGDQLGLDIS  240
KLGANEEDSS LNILSDGEPN GDFQESTPND VMHRGSSLKK RSLVHTEAID EVKYGYVSKK  300
SKHSATLSKP DKLSRSEGLS FSAEDATKDI ETIKLNQEKK DLPLSLLDGY KRNRGKFSPK  360
FSSLAKNRSS DAERVLPHTS MAANAIDELI EDIEIDEKSD GMVAVAAPNE NGTLDNKISS  420
SYLPPLPPPV NQNVYKQYEG DDEDVDVDVE KVDSEMIDID LNGEVDIEQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	109	RRPKKKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	9e-40	C3H family protein