PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020694116.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 389aa MW: 43645.4 Da PI: 6.2003

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020694116.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	91	137	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd l+++vkq+G++ W++Iar++ gR +kqc++rw+++l XP_020694116.1 91 KGQWTIEEDRMLIHLVKQHGTRKWSLIARKFI-GRIGKQCRERWHNHL 137 799***************************.***********97 PP
2	Myb_DNA-binding	57.5	3e-18	143	185	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ lv+a+k+ G++ W+ Ia++++ gRt++++k++w+ XP_020694116.1 143 KDSWTEEEESMLVQAHKEIGNK-WAEIAKRIP-GRTENSIKNHWN 185 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MEEENTFLTS SQSNQLLLQP LSPLIVPLES SLREKKQSLL MQREGFAGLQ VFCYNNGGRV 60 DEMDCATVDG EKSVEIPSSS SAMEVSIGIV KGQWTIEEDR MLIHLVKQHG TRKWSLIARK 120 FIGRIGKQCR ERWHNHLRPD IKKDSWTEEE ESMLVQAHKE IGNKWAEIAK RIPGRTENSI 180 KNHWNATKRK QSSNKKLRRK AIHGDAGAFK LTALQEYIKS KTLSLPDITP TATSPSTCHS 240 STSNEFLLQP PQPDDSELAS QMVEELLSME KPEIMRGLDE EKRDLLGCSK VEFVSQFLNT 300 EESFPSPSNV TSAGLETQSG SNLQWDFYIS NLLTGPSLPT IEEIGSFNAD KVTGADGAQA 360 SPIRSADMDL MEILHWHLSR LPSKTFGGY

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MEEENTFLTS SQSNQLLLQP LSPLIVPLES SLREKKQSLL MQREGFAGLQ VFCYNNGGRV  60
DEMDCATVDG EKSVEIPSSS SAMEVSIGIV KGQWTIEEDR MLIHLVKQHG TRKWSLIARK  120
FIGRIGKQCR ERWHNHLRPD IKKDSWTEEE ESMLVQAHKE IGNKWAEIAK RIPGRTENSI  180
KNHWNATKRK QSSNKKLRRK AIHGDAGAFK LTALQEYIKS KTLSLPDITP TATSPSTCHS  240
STSNEFLLQP PQPDDSELAS QMVEELLSME KPEIMRGLDE EKRDLLGCSK VEFVSQFLNT  300
EESFPSPSNV TSAGLETQSG SNLQWDFYIS NLLTGPSLPT IEEIGSFNAD KVTGADGAQA  360
SPIRSADMDL MEILHWHLSR LPSKTFGGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	5e-58	MYB family protein