PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020694090.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 511aa MW: 56355.5 Da PI: 6.7604

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020694090.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.4	4.6e-17	197	246	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr llP++ ++K +Ka+ L +++eYI+ Lq XP_020694090.1 197 RSKHSATEQRRRSKINDRFQILRGLLPNS----DQKRDKASFLLEVIEYIQFLQ 246 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MLMELPGKKK TRDLLSLYTK ESSFQLQDSR PHAQGFLMKT HDFLQPLETA DDEKTHKGPT 60 QRTTHVLPGG IGTYSISHVS SGASSFAVVK PESNTCGPDA AYAFPVWDAA KEPRPTTGQW 120 PSTFAALSPP SFGSLASSSE FPDKKQRFME SASRFSKGFE EDDDDDEEFG KRESSSHKDL 180 TVKIDGKTGE QKACTPRSKH SATEQRRRSK INDRFQILRG LLPNSDQKRD KASFLLEVIE 240 YIQFLQERLQ KYESMYPGWS DETAKLMPWV KVYFRSFWKN SRNNHHGSGD GMIDPQVLKN 300 GASSGLLMSD SSIPVAPSIL SSSQNPTESD LIAGVSYKEL ENPNGFSNKV AASPASLQPN 360 LYPSIGRGTG DVSHPQQRLI PETVFTGSQS EWLRSSFPTG CNVSNDEINA QELTIDEGTI 420 SVSSEYSQGL LNTLSQALQN SGIDLSQASI SVHINLGRRA SVSRRNASSM AAPKEQDEPL 480 SSNLVMNSTR SGNRSDESEQ ATKKHKLDHH N

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MLMELPGKKK TRDLLSLYTK ESSFQLQDSR PHAQGFLMKT HDFLQPLETA DDEKTHKGPT  60
QRTTHVLPGG IGTYSISHVS SGASSFAVVK PESNTCGPDA AYAFPVWDAA KEPRPTTGQW  120
PSTFAALSPP SFGSLASSSE FPDKKQRFME SASRFSKGFE EDDDDDEEFG KRESSSHKDL  180
TVKIDGKTGE QKACTPRSKH SATEQRRRSK INDRFQILRG LLPNSDQKRD KASFLLEVIE  240
YIQFLQERLQ KYESMYPGWS DETAKLMPWV KVYFRSFWKN SRNNHHGSGD GMIDPQVLKN  300
GASSGLLMSD SSIPVAPSIL SSSQNPTESD LIAGVSYKEL ENPNGFSNKV AASPASLQPN  360
LYPSIGRGTG DVSHPQQRLI PETVFTGSQS EWLRSSFPTG CNVSNDEINA QELTIDEGTI  420
SVSSEYSQGL LNTLSQALQN SGIDLSQASI SVHINLGRRA SVSRRNASSM AAPKEQDEPL  480
SSNLVMNSTR SGNRSDESEQ ATKKHKLDHH N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.6	8e-58	bHLH family protein