PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020693960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 347aa MW: 38031.4 Da PI: 6.5071 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl XP_020693960.1 14 KGPWTSEEDQKLLAYIEKHGHGSWRALPNKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.4e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_020693960.1 67 RGKFSMQEEQSIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence |
MGRSPCCDKV GLKKGPWTSE EDQKLLAYIE KHGHGSWRAL PNKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SMQEEQSIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPITHKPKS DNLSSADGHS KCSANLNHMA QWESARLEAE ARLVRESKLR STTIPSNTAS 180 TFTPKNQPQL PPSVPMTPAA SPCLDVLSAL QGVWAKPAAI NGQGRGYTID LESPTSTLSF 240 SDNNMMAPTI SNFSMDTAAP FVSTEASSWL SESSGGDFAA GFTGMLSDEA NEQNSADRCD 300 DSDNAECGSC VDVEESEGEE DENKNYWSSI LNLVNSSSPP NSPPPVF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 1e-109 | MYB family protein |