PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020693959.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 347aa MW: 38031.4 Da PI: 6.5071

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020693959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl XP_020693959.1 14 KGPWTSEEDQKLLAYIEKHGHGSWRALPNKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	51	3.4e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_020693959.1 67 RGKFSMQEEQSIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MGRSPCCDKV GLKKGPWTSE EDQKLLAYIE KHGHGSWRAL PNKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SMQEEQSIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPITHKPKS DNLSSADGHS KCSANLNHMA QWESARLEAE ARLVRESKLR STTIPSNTAS 180 TFTPKNQPQL PPSVPMTPAA SPCLDVLSAL QGVWAKPAAI NGQGRGYTID LESPTSTLSF 240 SDNNMMAPTI SNFSMDTAAP FVSTEASSWL SESSGGDFAA GFTGMLSDEA NEQNSADRCD 300 DSDNAECGSC VDVEESEGEE DENKNYWSSI LNLVNSSSPP NSPPPVF

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MGRSPCCDKV GLKKGPWTSE EDQKLLAYIE KHGHGSWRAL PNKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SMQEEQSIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPITHKPKS DNLSSADGHS KCSANLNHMA QWESARLEAE ARLVRESKLR STTIPSNTAS  180
TFTPKNQPQL PPSVPMTPAA SPCLDVLSAL QGVWAKPAAI NGQGRGYTID LESPTSTLSF  240
SDNNMMAPTI SNFSMDTAAP FVSTEASSWL SESSGGDFAA GFTGMLSDEA NEQNSADRCD  300
DSDNAECGSC VDVEESEGEE DENKNYWSSI LNLVNSSSPP NSPPPVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01140.1	1e-109	MYB family protein