PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020693876.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family Trihelix
Protein Properties Length: 289aa    MW: 32239.8 Da    PI: 10.7682
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020693876.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.22.1e-1832125186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrt..sessstcpyfdqle 86 
                     +W+++e+laLie +r ++++lr ++l++++W+ev++ +            ++++qC++k+e+l+kr++  + +    +   + ss++p+f  +e
  XP_020693876.2  32 CWSHDETLALIESYRHKWHSLRCANLRAADWDEVAADLsrrsslLPSATPKTSVQCRHKIEKLRKRFRSDRLRXPLLSalTPPSSSWPFFPFME 125
                     8*************************************88888888899*******************998888776423556779****9887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MASSSPSPAV ASPPEPPLTA PQPTRRGLPP PCWSHDETLA LIESYRHKWH SLRCANLRAA  60
DWDEVAADLS RRSSLLPSAT PKTSVQCRHK IEKLRKRFRS DRLRXPLLSA LTPPSSSWPF  120
FPFMESLEQP PSASLSGSPS HSDDADDSRT IRRLVSNGEG LRFTVPKAVR SKKMNPSSGG  180
GKLKGVFSDA GVKPAMEEMR RRLERKRKEE MEAGTAGGMV EALRMVGDGF MRIEQVKLDM  240
ARETERIRME MELKRTEMII DSQQRIVDAF VKSFVGGVKR KKGKVSPDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-21Trihelix family protein