PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020693860.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

GATA

Protein Properties

Length: 581aa MW: 65109.9 Da PI: 6.9337

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020693860.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.8	2.3e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_020693860.1 7 CRHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MGKHGPCRHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLANYTPLHA REPIEWEEPK 60 VTKMKSISFK TTEQRLQKRK HMNGIVEKVR QIPFSESDQN YIRTFEGDAS NRSSSGSAIS 120 CSESCANFCA VDASDCTGSA QSNAWDSLVP VPSKKRTVIN LKPSVEKLTK ELYSIWHEQQ 180 SSNLSGSSEE ELLFEGETRM GSVEIGHGGV LLRYPSSKAV EEESEASSLP ADKKLVGVPY 240 SRSASSFVDN ESKRTSFPNP GIDKFKKSAM HVVQDHARRD RFPPEYLDVL QKRDSAMRFT 300 DLKVVINLEV FMEHMKNDEQ KQLMKYLPSI DTANASESLR SLFSSPQFIE NFSYFQQLIQ 360 DGIFDLSSSE MNVEECKSLK RLVLFNFTKS SWVQHYEELK DIKHKHATGV NRGEGGSNFV 420 GQSNLIPIKR PHESQNQHLQ ESKGIMRSPK RVCRSSNTKF SLTKSSVVNP DEAGSTEILD 480 NEDFLDNEGT CFSPRSLFAS PPDRSSMLQL TDDGSDQDLL LDVRCSTSFP EAELLYHHPW 540 KQKTPSNSSL AESSAVAEEE SLCNFPASSF RSQQLNQCKG A

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MGKHGPCRHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLANYTPLHA REPIEWEEPK  60
VTKMKSISFK TTEQRLQKRK HMNGIVEKVR QIPFSESDQN YIRTFEGDAS NRSSSGSAIS  120
CSESCANFCA VDASDCTGSA QSNAWDSLVP VPSKKRTVIN LKPSVEKLTK ELYSIWHEQQ  180
SSNLSGSSEE ELLFEGETRM GSVEIGHGGV LLRYPSSKAV EEESEASSLP ADKKLVGVPY  240
SRSASSFVDN ESKRTSFPNP GIDKFKKSAM HVVQDHARRD RFPPEYLDVL QKRDSAMRFT  300
DLKVVINLEV FMEHMKNDEQ KQLMKYLPSI DTANASESLR SLFSSPQFIE NFSYFQQLIQ  360
DGIFDLSSSE MNVEECKSLK RLVLFNFTKS SWVQHYEELK DIKHKHATGV NRGEGGSNFV  420
GQSNLIPIKR PHESQNQHLQ ESKGIMRSPK RVCRSSNTKF SLTKSSVVNP DEAGSTEILD  480
NEDFLDNEGT CFSPRSLFAS PPDRSSMLQL TDDGSDQDLL LDVRCSTSFP EAELLYHHPW  540
KQKTPSNSSL AESSAVAEEE SLCNFPASSF RSQQLNQCKG A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-92	GATA family protein