PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020693801.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ERF
Protein Properties Length: 266aa    MW: 28625.1 Da    PI: 9.3819
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020693801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-20102152255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f taeeAa a+++a+ +++g
  XP_020693801.1 102 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEEAALAYDRAAYRMRG 152
                     8********.***********9987..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MHSLDSIRRH LLDDSEMSSS GVTATPQPLY NRSSSFGRLV ADHWIEVPFR PDDSDDMVIY  60
LTLHDAFRHG WLPEGGSATA SVLPPLVKPD SPDIGVPAKG KHYRGVRQRP WGKFAAEIRD  120
PAKNGARVWL GTFETAEEAA LAYDRAAYRM RGSRALLNFP LRISEEADLS PASGKRVKPE  180
PSSPSFSSSS SSLISQSEGS TKRRKRGDAA ARMEPASPAA VSSSPSAAPL QLPAQAQAGL  240
GFGIRPVEFQ GGAVEQLTHV GQLLVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.16e-46ERF family protein