PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020693698.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 353aa    MW: 40086.6 Da    PI: 8.9387
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020693698.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.1e-11278303126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +k +lC++++++G+C+yG +C+F Hg
  XP_020693698.1 278 FKSKLCKNWQKNGECPYGQQCHFTHG 303
                     6889********************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MNHELVSSSN VDRIAASSVS PMLFVPPDHR IPSPPYLTTE RDFTRLSPQI SNPMVSQFAI  60
SPPIQCSGKT PITQSSSPVS FEDKDPVAIE NRLYLSQLAL QNQQIKDRYA LCFSKLQDAM  120
NEAENISKKN IDLRRANDVL CQRLGLYFEK HKSRNPMNSD CPPMSRLDGN FRHLSLTEPP  180
DEASPPSVFG FQDNRHGRKF PAVDEKSLTL PKCISIRSTR HLKIHQMGGT SSESNRNIRH  240
RPTTPMMKQK VCLGGAENKD GGEAEDAVEL DVCNLRLFKS KLCKNWQKNG ECPYGQQCHF  300
THGIGELRPV IRHPRYKTEL CRMILAGDTC PYGHRCHFRH SIYNDKNEKP NFK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-43C3H family protein