PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020693534.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 214aa MW: 24015.2 Da PI: 6.8012 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.2e-19 | 49 | 102 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le F k+r++ ++++LA +lgL+ +qV vWFqNrRa++k XP_020693534.1 49 KKRRLSDDQVRFLEMNFGKERKLESGRKAHLAIELGLDPKQVAVWFQNRRARWK 102 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.1 | 1.1e-38 | 49 | 139 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls++qv++LE++F +e+kLe+ rK++la eLgl+p+qvavWFqnrRAR+k+kqlE +y +L++++d++ e++rLe+ev L+++l XP_020693534.1 49 KKRRLSDDQVRFLEMNFGKERKLESGRKAHLAIELGLDPKQVAVWFQNRRARWKSKQLEDEYVRLRSSHDSVLIEKCRLENEVLMLKDKLV 139 9**************************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence |
MEEEKSLISS MVSSELYSQM AQGEPKARRR RKKAKIVGDE EMDIVCEGKK RRLSDDQVRF 60 LEMNFGKERK LESGRKAHLA IELGLDPKQV AVWFQNRRAR WKSKQLEDEY VRLRSSHDSV 120 LIEKCRLENE VLMLKDKLVQ SEEEIKRLTS GGGGGGGVGG GTGEVAVAGS PSSSMTTATH 180 LGEFGMDEGD GMYAAAAYGD SYYYKYMMEL GYLY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 52 | RRRRKKAKIVGDEEMDIVCEGKKRR |
2 | 29 | 53 | RRRRKKAKIVGDEEMDIVCEGKKRR |
3 | 30 | 54 | RRRRKKAKIVGDEEMDIVCEGKKRR |
4 | 31 | 55 | RRRRKKAKIVGDEEMDIVCEGKKRR |
5 | 97 | 105 | RRARWKSKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 6e-43 | HD-ZIP family protein |