PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020693394.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ERF
Protein Properties Length: 388aa    MW: 41489.2 Da    PI: 8.2217
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020693394.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78e-20182231255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  XP_020693394.1 182 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 231
                     7********.**********7.....337*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    
MCIIKVAKPS ESDDIKRFFS AGEEEEEEEA GSTAQTAYVT VAAAQTADVK VAAYKSSAPP  60
VVGLLSRFGG EQEMSVIVSA LTRVVTGSEQ PAGVPLSSAP SSSFISRCGS GIKREREELM  120
SPKLARHYTG FLAGESSSSS AAQKRSPHSF PPTGQSPVPS TPATLHEEPK APPDAEKEVH  180
RRYRGVRQRP WGKWAAEIRD PHKAARVWLG TFETAEAAAR AYDEAALRFR GNRAKLNFPE  240
AVELRQPINV SPAIRLPESG PPARMSGSWP SPRSQTMDVT RDYVEYSRLL QGTGEYQGMP  300
PTALLDQLMY SSSSMASTSH TSSSFGSHSL TRGSSSVSSS PFPMAPSYSP ASEAGQHMSI  360
FWPPGGGGSG SPSPPWTESS RDPPSRSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-25ERF family protein