PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020693356.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 323aa    MW: 37469.5 Da    PI: 6.0496
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020693356.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.31.7e-121251443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    en + r  t++ R +g+ KKA+ELSvLC+++v++  fs++
  XP_020693356.2 12 ENFRTRIKTYTTRMKGLKKKANELSVLCGVDVLLASFSPE 51
                    67778889***************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MGRAKLKLIY QENFRTRIKT YTTRMKGLKK KANELSVLCG VDVLLASFSP ELNTLELWPE  60
DTIEFSRIRE RFLSFRMKKI CSCDHEGNGI TEQQISQRTT PASLSLSSFH EDKAAMEIKL  120
QEVRERLEFL QRQRQEEAER LQAQYEASKA LQQIQDLHRR QQSFSFPGCL PPHITADFEI  180
PLQPELFPHQ KLSPFAQFLP LHVQPSPFAQ DLFPRHDFNK PLQQDFHPHE QASLFSHSLL  240
PHEQPLLVPL FLSPHEQPLS ISLSLSDQEQ PSPLSKSTPP HRDADFNRED APASLLPFDS  300
PLWSNYECLS WCDNLLLDYE TEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.15e-11M-type_MADS family protein