PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020693298.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARF
Protein Properties Length: 844aa    MW: 94005.5 Da    PI: 6.8635
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020693298.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.31e-21163264199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      + +++  ++l+ +d++  +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + ++
  XP_020693298.1 163 FCKTLTASDTSTHGGFSVLRRHADEClpaldmDRQPP-AQELVAKDLHRVEWRFRHIFRGQPRRHLLQSGWSLFVSAKRLVAGDAFIFL--RGEN 254
                     99*****************************744443.459************************************************..3478 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      e +v+v+r+
  XP_020693298.1 255 DEIRVGVRRA 264
                     8889**9986 PP
2Auxin_resp115.54.7e-38289371183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t+++F+v+Y+Pr+s+seF++++ek+++++k++ svGmRfkm+fe+e+++e+r+ Gt+++v d+d+ +Wp SkWr+Lk
  XP_020693298.1 289 AWHAVNTGTMFTVYYKPRTSPSEFIIPYEKYMESIKSSQSVGMRFKMRFEGEEAPEQRFIGTIIDVGDADSKNWPSSKWRCLK 371
                     89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    
MYMAASEASV KATNCRGEST SSACSEPHKS EAERNMASEV GCGFAGGVSS GLDMDGALEN  60
ELWHACAGPL VTVPRLGERV FYFPQGHIEQ VAASTNQVAD QQMPVYNLPA KILCRVVNVL  120
LKAEPDTDEV FAQVTLIPES KDESTVEKES LPPPLPRPHV RSFCKTLTAS DTSTHGGFSV  180
LRRHADECLP ALDMDRQPPA QELVAKDLHR VEWRFRHIFR GQPRRHLLQS GWSLFVSAKR  240
LVAGDAFIFL RGENDEIRVG VRRAIRQQPN VPPSVISSHS MHLGVLATAW HAVNTGTMFT  300
VYYKPRTSPS EFIIPYEKYM ESIKSSQSVG MRFKMRFEGE EAPEQRFIGT IIDVGDADSK  360
NWPSSKWRCL KVRWDETSSI PRPERVSPWQ IEPSVTPPSP NSLHIARPKK PRTHTIPASP  420
DASVRTKETT SKVQVNPSTC VLRVLQGQES MTLKEAYTAR KPMMWSSSHD EVKNISSIQR  480
TLGSEDQTQI MKHGSNYGDP LFPTCIGSRV LGSSQFEQNI DAVNLLRCNF QDPLPQQSII  540
SGKWSLLPQS SHSNMELNLK MAAQPDKPSY PGIGNGRFSN QVGYFPFEFE QPTPNWFTHS  600
LPDSQTGNRT KPSLIKPQPL ESEKNQIGKL KGNGNCKLFG VQLNSNSSAS ELPLPQASVL  660
NDSEVQIQPT STLHLSLTMQ DHHFEPSEAP TLGDSSTAAT IKGEIVLPSL RNLKGVQVRQ  720
QGSLARSCTK VHKQGIALGR SVDLSKFSNY DELIMGLDQM FEFEGELMAP TKHWLLVYTD  780
DEGDMMLVGD DPWREFCIMV RKIFIYTREE VQKMNHSLLD SEDSAVPKGL KDFNCSSITD  840
VENC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.40.0ARF family protein