PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020693297.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARF
Protein Properties Length: 845aa    MW: 94133.6 Da    PI: 6.8635
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020693297.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.31e-21164265199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      + +++  ++l+ +d++  +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + ++
  XP_020693297.1 164 FCKTLTASDTSTHGGFSVLRRHADEClpaldmDRQPP-AQELVAKDLHRVEWRFRHIFRGQPRRHLLQSGWSLFVSAKRLVAGDAFIFL--RGEN 255
                     99*****************************744443.459************************************************..3478 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      e +v+v+r+
  XP_020693297.1 256 DEIRVGVRRA 265
                     8889**9986 PP
2Auxin_resp115.54.7e-38290372183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t+++F+v+Y+Pr+s+seF++++ek+++++k++ svGmRfkm+fe+e+++e+r+ Gt+++v d+d+ +Wp SkWr+Lk
  XP_020693297.1 290 AWHAVNTGTMFTVYYKPRTSPSEFIIPYEKYMESIKSSQSVGMRFKMRFEGEEAPEQRFIGTIIDVGDADSKNWPSSKWRCLK 372
                     89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    
MYMAASEASV KATNCRGEST SSACSEPHKS EAERNMASEV GCGFAGGVSS GLDMDGALEN  60
ELWHACAGPL VTVPRLGERV FYFPQGHIEQ VAASTNQVAD QQMPVYNLPA KILCRVVNVL  120
LKAEPDTDEV FAQVTLIPES KQDESTVEKE SLPPPLPRPH VRSFCKTLTA SDTSTHGGFS  180
VLRRHADECL PALDMDRQPP AQELVAKDLH RVEWRFRHIF RGQPRRHLLQ SGWSLFVSAK  240
RLVAGDAFIF LRGENDEIRV GVRRAIRQQP NVPPSVISSH SMHLGVLATA WHAVNTGTMF  300
TVYYKPRTSP SEFIIPYEKY MESIKSSQSV GMRFKMRFEG EEAPEQRFIG TIIDVGDADS  360
KNWPSSKWRC LKVRWDETSS IPRPERVSPW QIEPSVTPPS PNSLHIARPK KPRTHTIPAS  420
PDASVRTKET TSKVQVNPST CVLRVLQGQE SMTLKEAYTA RKPMMWSSSH DEVKNISSIQ  480
RTLGSEDQTQ IMKHGSNYGD PLFPTCIGSR VLGSSQFEQN IDAVNLLRCN FQDPLPQQSI  540
ISGKWSLLPQ SSHSNMELNL KMAAQPDKPS YPGIGNGRFS NQVGYFPFEF EQPTPNWFTH  600
SLPDSQTGNR TKPSLIKPQP LESEKNQIGK LKGNGNCKLF GVQLNSNSSA SELPLPQASV  660
LNDSEVQIQP TSTLHLSLTM QDHHFEPSEA PTLGDSSTAA TIKGEIVLPS LRNLKGVQVR  720
QQGSLARSCT KVHKQGIALG RSVDLSKFSN YDELIMGLDQ MFEFEGELMA PTKHWLLVYT  780
DDEGDMMLVG DDPWREFCIM VRKIFIYTRE EVQKMNHSLL DSEDSAVPKG LKDFNCSSIT  840
DVENC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.40.0ARF family protein