PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020693295.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family WRKY
Protein Properties Length: 294aa    MW: 33005 Da    PI: 5.2754
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020693295.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.38.4e-25121181259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqKe+ ++++prsY+rCt++   gC+++++v++s+edp + +itY geH++e
  XP_020693295.1 121 EDGHTWRKYGQKEIFSAKHPRSYFRCTYKydqGCKATRQVQKSEEDPFLYVITYFGEHTCE 181
                     8***************************99999**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MASSEAEGSL PPAMALVIDE LTKGRQSVAT LATLLFVDPL ELQTAKLLLE ETMSTISKAI  60
AILECVNSQQ DHTAVQLESP SSAVTSKGPV GKRKIQSTRK AASRKRGNPY SWKRVTSATI  120
EDGHTWRKYG QKEIFSAKHP RSYFRCTYKY DQGCKATRQV QKSEEDPFLY VITYFGEHTC  180
EAAKENNPRC REPCVVSFES NKINEIKQEI AFSSFPSHKQ ENEEEVVSNL TSVDSRSNCL  240
EQPAMELHKS SITGLEPGWS DSSSGLNFSI NSYDVEFMDL EDILSFELNE FFAW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-28WRKY family protein