PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020693147.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARF

Protein Properties

Length: 661aa MW: 73871.6 Da PI: 5.8039

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020693147.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.3	2.5e-22	129	229	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k lt sd++++g +++ +++a+e+ ++++ ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + + XP_020693147.1 129 FCKMLTASDTSTHGGFSVLRRHADEClppldmsQHPP--WQELVAKDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFI--RGE 219 89***************************654444..458********************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_020693147.1 220 NGELYVGVRR 229 999***97 PP
2	Auxin_resp	109.1	4.6e-36	255	337	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+s F+v+Y+Pras+s+F+++v+k+++a ++++svGmRfkm+fe+++++err+sGt++g+++ +++Wp+S WrsLk XP_020693147.1 255 ASHAVSTGSLFSVFYKPRASRSQFIISVNKYLEARSQNLSVGMRFKMRFEGDEAPERRFSGTIIGIREKASSSWPDSVWRSLK 337 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MALAPPTRSA SEVLGSATLH GNLLYKELWH ACAGPLVTLP RQKELVYYFP QGHMEQLEAS 60 TDQGLDQQMP FFDLPSKILC RVVNVELRAE PDTDEVYAQI TLQPEPDQSE VTSPDPPLPE 120 PECCMVHSFC KMLTASDTST HGGFSVLRRH ADECLPPLDM SQHPPWQELV AKDLHGNEWH 180 FRHIFRGQPR RHLLTTGWSV FVSSKKLVAG DAFIFIRGEN GELYVGVRRL MRQVNNMPSS 240 VISSHSMHLG VLATASHAVS TGSLFSVFYK PRASRSQFII SVNKYLEARS QNLSVGMRFK 300 MRFEGDEAPE RRFSGTIIGI REKASSSWPD SVWRSLKIQW DEPSSIPRPD CVSPWELEPI 360 VVAPPLTSQT MVRCKRARPP LSSSAAQEFS SVLGPWKSQS ETNQSLPFTG LPRGHESFSL 420 PCPSTLFPSS INSNIGQPAT KNTLCWSTRP ETQSESFYTT TVNVDQPSEK KQEPSSGFML 480 FGIQLIESST VAEEASSMAA ITDVVKDDHD HLGVDSEQHS HPSNINLSDA PELSSEPENS 540 CLRSPQESQS RQTRSCTKVH KLGMAVGRAV DLTRLEGYED LLRKLEEMFS IQGELVGESK 600 KWQVVYTDDE DDMMMVGDDP WPEFCSMVKK IYIYTCEEAK RLSPKSMLKK PLPQAIGPSD 660 D

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MALAPPTRSA SEVLGSATLH GNLLYKELWH ACAGPLVTLP RQKELVYYFP QGHMEQLEAS  60
TDQGLDQQMP FFDLPSKILC RVVNVELRAE PDTDEVYAQI TLQPEPDQSE VTSPDPPLPE  120
PECCMVHSFC KMLTASDTST HGGFSVLRRH ADECLPPLDM SQHPPWQELV AKDLHGNEWH  180
FRHIFRGQPR RHLLTTGWSV FVSSKKLVAG DAFIFIRGEN GELYVGVRRL MRQVNNMPSS  240
VISSHSMHLG VLATASHAVS TGSLFSVFYK PRASRSQFII SVNKYLEARS QNLSVGMRFK  300
MRFEGDEAPE RRFSGTIIGI REKASSSWPD SVWRSLKIQW DEPSSIPRPD CVSPWELEPI  360
VVAPPLTSQT MVRCKRARPP LSSSAAQEFS SVLGPWKSQS ETNQSLPFTG LPRGHESFSL  420
PCPSTLFPSS INSNIGQPAT KNTLCWSTRP ETQSESFYTT TVNVDQPSEK KQEPSSGFML  480
FGIQLIESST VAEEASSMAA ITDVVKDDHD HLGVDSEQHS HPSNINLSDA PELSSEPENS  540
CLRSPQESQS RQTRSCTKVH KLGMAVGRAV DLTRLEGYED LLRKLEEMFS IQGELVGESK  600
KWQVVYTDDE DDMMMVGDDP WPEFCSMVKK IYIYTCEEAK RLSPKSMLKK PLPQAIGPSD  660
D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.2	0.0	ARF family protein