PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020693049.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 264aa MW: 29383.5 Da PI: 9.2861

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020693049.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7.4e-18	110	164	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_020693049.1 110 RKKLRLSKEQSALLEEKFREHSTLNPKQKLTLAKQLNLRPRQVEVWFQNRRARTK 164 677889***********************************************98 PP
2	HD-ZIP_I/II	116.1	2e-37	110	197	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rlskeq++lLEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r ++al+een +L++e +e + XP_020693049.1 110 RKKLRLSKEQSALLEEKFREHSTLNPKQKLTLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLRRYCEALTEENIKLKRELQEQK 197 69*********************************************************************************99865 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MNQAVEDSYN ASLVLQLACG AGSTGVVSTG HRRCRRRDFS KKSEPSIQIP MLSGPSLTLG 60 ISDSVYSQSF AEASLSTSFL NVKKEAEARS EETEKFSPRG SDEEDEGSCR KKLRLSKEQS 120 ALLEEKFREH STLNPKQKLT LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEFLRRYCE 180 ALTEENIKLK RELQEQKALN LTSAAVAPMY MKLPAVTYTI CPSCERVTGP GGDGTKTISF 240 TAAATAMVAK KTLFLNPFSH SATC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	167	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-61	HD-ZIP family protein