PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020692950.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

GRF

Protein Properties

Length: 559aa MW: 60393.7 Da PI: 9.1002

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020692950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.3	1.6e-24	203	246	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_020692950.1 203 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 246 79***************************************998 PP
2	QLQ	40.5	8.6e-15	133	166	1	34
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +aFT +Q ++Lk+Q l+y y+ an+P+P +Ll XP_020692950.1 133 GAFTLSQRMELKQQMLIYNYIWANVPIPTNLLSS 166 59*****************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence
MDSHGFLGMK VLVGSSPCSL SPPLASSDLE SIRKRGLFTS HFLKQGRSCR ADEDEQRSPK 60 IARSMALSSA SNGEQMLSFS SSKPSSLVYS CDKTSVLATL PPSSAPSSLV RRAGLNSVDL 120 NVKMQGAVRG PSGAFTLSQR MELKQQMLIY NYIWANVPIP TNLLSSLMRG LSPAWFSVCS 180 TGSVRPNAAW WGYFHPGYVG NADPEPGRCR RTDGKKWRCS RDAVPDQKYC ERHINRGRHR 240 SRKPVEGHGE HTKITMPGVT NPTLVSSVPS GGQSSNSLSV TRHQIQIPHA TVNASSSQFW 300 MPTSANATNN RKESPQDHSI LTSTTKPCDS LFTTSRNYNP LSETSSIGLN AGNILKSHLS 360 GSFLANNNFD TPLELHDQQN QQPQVLGHFI DDWPASRSES SNIIWPGVEE IQSEKTQLSM 420 PFPLASSDFS SSNSSPAPER LSPLRMGLGL IGVPNEQNSA MKWRATASMG GPLGEALTST 480 SSTLLDGKKN FLSLINDGWD LNPQLASSTN NVIQSTTVSS VSSGSDNGVK VEKNANEGLS 540 CLFGPNNVNS LNLPPFVSI

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence

MDSHGFLGMK VLVGSSPCSL SPPLASSDLE SIRKRGLFTS HFLKQGRSCR ADEDEQRSPK  60
IARSMALSSA SNGEQMLSFS SSKPSSLVYS CDKTSVLATL PPSSAPSSLV RRAGLNSVDL  120
NVKMQGAVRG PSGAFTLSQR MELKQQMLIY NYIWANVPIP TNLLSSLMRG LSPAWFSVCS  180
TGSVRPNAAW WGYFHPGYVG NADPEPGRCR RTDGKKWRCS RDAVPDQKYC ERHINRGRHR  240
SRKPVEGHGE HTKITMPGVT NPTLVSSVPS GGQSSNSLSV TRHQIQIPHA TVNASSSQFW  300
MPTSANATNN RKESPQDHSI LTSTTKPCDS LFTTSRNYNP LSETSSIGLN AGNILKSHLS  360
GSFLANNNFD TPLELHDQQN QQPQVLGHFI DDWPASRSES SNIIWPGVEE IQSEKTQLSM  420
PFPLASSDFS SSNSSPAPER LSPLRMGLGL IGVPNEQNSA MKWRATASMG GPLGEALTST  480
SSTLLDGKKN FLSLINDGWD LNPQLASSTN NVIQSTTVSS VSSGSDNGVK VEKNANEGLS  540
CLFGPNNVNS LNLPPFVSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-49	GRF family protein