PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020692855.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HB-PHD
Protein Properties Length: 657aa    MW: 73521.9 Da    PI: 4.593
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020692855.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.44.4e-124174601356
                     HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     + L e+ +kn+yp+++e+e LA++l++t +qV+ WF N R   +
  XP_020692855.1 417 KKLSEYLKKNQYPTKKEKESLAQELSMTYKQVTKWFDNARHSSR 460
                     568888899*******************************8765 PP
2Homeobox36.86.7e-12505554756
                     --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     f+++  + L e+F++++yps+e++eeLA++lg+t r+V+ WF   R + +
  XP_020692855.1 505 FKATYKKKLDEAFQESQYPSREKKEELAQELGMTFRKVSRWFETARRRSR 554
                     67777899***********************************9999987 PP
3PHD41.62.8e-1466121151
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C  Cg+    ++++++lCdg C++ fH+kCl+++l se++p g   wlC++C++k
  XP_020692855.1  66 FCGKCGSkeVSADNDIILCDGvCERGFHQKCLNPPLLSEDIPTGdeGWLCPQCDCK 121
                     699999976667********77********************9999*******985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    
MLTLVKAGRD KEKLRPEKEL ERAKSEILRC KLKIREIFKH LESLLAEGRL QESLFDPDGI  60
DSEDIFCGKC GSKEVSADND IILCDGVCER GFHQKCLNPP LLSEDIPTGD EGWLCPQCDC  120
KVECIDLLSE FRGTDLSIED SWERIFPEAA VLANGNGQYD DLNLPSDDSE DDDYKPEAQV  180
VEVDDQEEES GESDSSSSSY DSTSSDDNRN QATVELPSDD SEDDDYDPDA VDPDKEIQKS  240
KSSSDESDFT SDSDEFCAEL KKISYAEEAS SCSQPNLEFF VDSGRDEMKD KDKIYDYYEV  300
PSAMLDIDKQ ESGLSLSNKR GRERLDYKKL YDEAYGKSSS DSSDDEDWTE MSSPKKLKKT  360
DDQGIEVAND VFVKVTPKLP KKIASSSAVE KDHGPQEPGS SGCSSATVLR NSEVASKKLS  420
EYLKKNQYPT KKEKESLAQE LSMTYKQVTK WFDNARHSSR VSSKQLSKIC TATSKEVSVH  480
CDTPASHSEP DKGAAAKSPL SSKLFKATYK KKLDEAFQES QYPSREKKEE LAQELGMTFR  540
KVSRWFETAR RRSRSKESSN PCRIPGSHKF DIDEEEKTTG ASTPDTPANA KPDNRVSPLD  600
KVSTPTSSTS PWRHDHEIDL DSPIANGAAS NAKEKKAAVD DRQKAIAKEL RRMRRGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1642655RQKAIAKELRRMRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.14e-58HB-PHD family protein