PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020692855.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HB-PHD

Protein Properties

Length: 657aa MW: 73521.9 Da PI: 4.593

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020692855.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.4	4.4e-12	417	460	13	56
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + L e+ +kn+yp+++e+e LA++l++t +qV+ WF N R + XP_020692855.1 417 KKLSEYLKKNQYPTKKEKESLAQELSMTYKQVTKWFDNARHSSR 460 568888899*******************************8765 PP
2	Homeobox	36.8	6.7e-12	505	554	7	56
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 f+++ + L e+F++++yps+e++eeLA++lg+t r+V+ WF R + + XP_020692855.1 505 FKATYKKKLDEAFQESQYPSREKKEELAQELGMTFRKVSRWFETARRRSR 554 67777899***********************************9999987 PP
3	PHD	41.6	2.8e-14	66	121	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C Cg+ ++++++lCdg C++ fH+kCl+++l se++p g wlC++C++k XP_020692855.1 66 FCGKCGSkeVSADNDIILCDGvCERGFHQKCLNPPLLSEDIPTGdeGWLCPQCDCK 121 699999976667******77****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence
MLTLVKAGRD KEKLRPEKEL ERAKSEILRC KLKIREIFKH LESLLAEGRL QESLFDPDGI 60 DSEDIFCGKC GSKEVSADND IILCDGVCER GFHQKCLNPP LLSEDIPTGD EGWLCPQCDC 120 KVECIDLLSE FRGTDLSIED SWERIFPEAA VLANGNGQYD DLNLPSDDSE DDDYKPEAQV 180 VEVDDQEEES GESDSSSSSY DSTSSDDNRN QATVELPSDD SEDDDYDPDA VDPDKEIQKS 240 KSSSDESDFT SDSDEFCAEL KKISYAEEAS SCSQPNLEFF VDSGRDEMKD KDKIYDYYEV 300 PSAMLDIDKQ ESGLSLSNKR GRERLDYKKL YDEAYGKSSS DSSDDEDWTE MSSPKKLKKT 360 DDQGIEVAND VFVKVTPKLP KKIASSSAVE KDHGPQEPGS SGCSSATVLR NSEVASKKLS 420 EYLKKNQYPT KKEKESLAQE LSMTYKQVTK WFDNARHSSR VSSKQLSKIC TATSKEVSVH 480 CDTPASHSEP DKGAAAKSPL SSKLFKATYK KKLDEAFQES QYPSREKKEE LAQELGMTFR 540 KVSRWFETAR RRSRSKESSN PCRIPGSHKF DIDEEEKTTG ASTPDTPANA KPDNRVSPLD 600 KVSTPTSSTS PWRHDHEIDL DSPIANGAAS NAKEKKAAVD DRQKAIAKEL RRMRRGR

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence

MLTLVKAGRD KEKLRPEKEL ERAKSEILRC KLKIREIFKH LESLLAEGRL QESLFDPDGI  60
DSEDIFCGKC GSKEVSADND IILCDGVCER GFHQKCLNPP LLSEDIPTGD EGWLCPQCDC  120
KVECIDLLSE FRGTDLSIED SWERIFPEAA VLANGNGQYD DLNLPSDDSE DDDYKPEAQV  180
VEVDDQEEES GESDSSSSSY DSTSSDDNRN QATVELPSDD SEDDDYDPDA VDPDKEIQKS  240
KSSSDESDFT SDSDEFCAEL KKISYAEEAS SCSQPNLEFF VDSGRDEMKD KDKIYDYYEV  300
PSAMLDIDKQ ESGLSLSNKR GRERLDYKKL YDEAYGKSSS DSSDDEDWTE MSSPKKLKKT  360
DDQGIEVAND VFVKVTPKLP KKIASSSAVE KDHGPQEPGS SGCSSATVLR NSEVASKKLS  420
EYLKKNQYPT KKEKESLAQE LSMTYKQVTK WFDNARHSSR VSSKQLSKIC TATSKEVSVH  480
CDTPASHSEP DKGAAAKSPL SSKLFKATYK KKLDEAFQES QYPSREKKEE LAQELGMTFR  540
KVSRWFETAR RRSRSKESSN PCRIPGSHKF DIDEEEKTTG ASTPDTPANA KPDNRVSPLD  600
KVSTPTSSTS PWRHDHEIDL DSPIANGAAS NAKEKKAAVD DRQKAIAKEL RRMRRGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	642	655	RQKAIAKELRRMRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-58	HB-PHD family protein