PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020692781.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 769aa    MW: 83913 Da    PI: 5.7593
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020692781.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.7e-2097152156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+ +++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  XP_020692781.1  97 KKRYHRHTQHQIQEMETFFKDCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 152
                     688999***********************************************999 PP
2START229.69.2e-722865061206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+++a+++ep+W+       e +n++e++ +f+++ +      ++ea+r+++vv+m++++lve+l+d + qW++++     +a+tl
  XP_020692781.1 286 ELAVAAMEELIRMAQLGEPLWTPGLdgatETLNEEEYMHNFPRGIGpnpfgLKSEASRETAVVIMNHVNLVEILMDAN-QWSTMFSgivsRAMTL 379
                     57899*****************99999****************999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +v+s+g      galq+m++e+q++splvp R+++fvRy++q+++g+w+ivdvS+ds ++ +    v+R++++pSg+li++++ng+skv+wvehv
  XP_020692781.1 380 DVLSTGvagnynGALQVMTSEFQVPSPLVPtRESYFVRYCKQHPDGTWAIVDVSLDSLRPSQ----VMRCRRRPSGCLIQEMPNGYSKVIWVEHV 470
                     ***********************************************************976....8**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r++h+++++lv+sgla+gak+wv++l+rqce+
  XP_020692781.1 471 EVDDRSVHNIYKPLVNSGLAFGAKRWVSALDRQCER 506
                     **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    
MPAGIMIPAR HMSSLVGRNS GMSFGNSSAL TLGQTNLLET QQLPLQHQLI EMQTPPTTTA  60
ESELIRARED DFESKSGSEN IEGASGDEQD PNQRPRKKRY HRHTQHQIQE METFFKDCPH  120
PDDKQRKELS RELGLEPLQV KFWFQNKRTQ MKTQHERQEN GQLRADNERL RSENLRYKEA  180
LSNASCPTCG GPATLGEMSF DEHHLRIENA RLREEIDKIS GIAAKYVGKP MGSYPLLSPS  240
ITSRSPLDLG IGGFGPGLAG SDLFRAGELI RSVSGQPEID KPMVIELAVA AMEELIRMAQ  300
LGEPLWTPGL DGATETLNEE EYMHNFPRGI GPNPFGLKSE ASRETAVVIM NHVNLVEILM  360
DANQWSTMFS GIVSRAMTLD VLSTGVAGNY NGALQVMTSE FQVPSPLVPT RESYFVRYCK  420
QHPDGTWAIV DVSLDSLRPS QVMRCRRRPS GCLIQEMPNG YSKVIWVEHV EVDDRSVHNI  480
YKPLVNSGLA FGAKRWVSAL DRQCERLASV MASNIPSGDI GVITTSEGRK SMLKLAERMV  540
ISFCGGVSAS TTHQWTTLSG SGAEDVRVMT RKSVDDPGRP PGIVLNAATS FWLPVAPKRV  600
FDFLRDESSR SEWDILSNGG VVQEMAHIAN GRDHGNSVSL LRVNSTNSNQ SNMLILQESC  660
TDMTGSYVIY APVDVVAMNV VLNGGDPDYV ALLPSGFAIL PDGYGGVNGA GSGIGEVGSG  720
GSLLTVAFQI LVDSVPTAKL SLGSVATVNN LIACTVERIK AAVSGESAQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein