PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020692780.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 771aa    MW: 84172.3 Da    PI: 5.7593
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020692780.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.7e-2099154156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+ +++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  XP_020692780.1  99 KKRYHRHTQHQIQEMETFFKDCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 154
                     688999***********************************************999 PP
2START229.59.2e-722885081206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+++a+++ep+W+       e +n++e++ +f+++ +      ++ea+r+++vv+m++++lve+l+d + qW++++     +a+tl
  XP_020692780.1 288 ELAVAAMEELIRMAQLGEPLWTPGLdgatETLNEEEYMHNFPRGIGpnpfgLKSEASRETAVVIMNHVNLVEILMDAN-QWSTMFSgivsRAMTL 381
                     57899*****************99999****************999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +v+s+g      galq+m++e+q++splvp R+++fvRy++q+++g+w+ivdvS+ds ++ +    v+R++++pSg+li++++ng+skv+wvehv
  XP_020692780.1 382 DVLSTGvagnynGALQVMTSEFQVPSPLVPtRESYFVRYCKQHPDGTWAIVDVSLDSLRPSQ----VMRCRRRPSGCLIQEMPNGYSKVIWVEHV 472
                     ***********************************************************976....8**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r++h+++++lv+sgla+gak+wv++l+rqce+
  XP_020692780.1 473 EVDDRSVHNIYKPLVNSGLAFGAKRWVSALDRQCER 508
                     **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    
MPAGIMIPAR HMSSLVGRNS GMSFGNSSAL TLGQMQTNLL ETQQLPLQHQ LIEMQTPPTT  60
TAESELIRAR EDDFESKSGS ENIEGASGDE QDPNQRPRKK RYHRHTQHQI QEMETFFKDC  120
PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKTQHERQ ENGQLRADNE RLRSENLRYK  180
EALSNASCPT CGGPATLGEM SFDEHHLRIE NARLREEIDK ISGIAAKYVG KPMGSYPLLS  240
PSITSRSPLD LGIGGFGPGL AGSDLFRAGE LIRSVSGQPE IDKPMVIELA VAAMEELIRM  300
AQLGEPLWTP GLDGATETLN EEEYMHNFPR GIGPNPFGLK SEASRETAVV IMNHVNLVEI  360
LMDANQWSTM FSGIVSRAMT LDVLSTGVAG NYNGALQVMT SEFQVPSPLV PTRESYFVRY  420
CKQHPDGTWA IVDVSLDSLR PSQVMRCRRR PSGCLIQEMP NGYSKVIWVE HVEVDDRSVH  480
NIYKPLVNSG LAFGAKRWVS ALDRQCERLA SVMASNIPSG DIGVITTSEG RKSMLKLAER  540
MVISFCGGVS ASTTHQWTTL SGSGAEDVRV MTRKSVDDPG RPPGIVLNAA TSFWLPVAPK  600
RVFDFLRDES SRSEWDILSN GGVVQEMAHI ANGRDHGNSV SLLRVNSTNS NQSNMLILQE  660
SCTDMTGSYV IYAPVDVVAM NVVLNGGDPD YVALLPSGFA ILPDGYGGVN GAGSGIGEVG  720
SGGSLLTVAF QILVDSVPTA KLSLGSVATV NNLIACTVER IKAAVSGESA Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein