PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020692711.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25431.6 Da    PI: 7.4256
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020692711.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.61.4e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +i+n + rqvtfskRr g++KKAeELS+LCdaev +i+fsstgkl+e+ss
  XP_020692711.1 10 KINNATARQVTFSKRRRGLFKKAEELSILCDAEVGLIVFSSTGKLFEFSS 59
                    699*********************************************96 PP

2K-box62.12.2e-2176171499
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      s++++ +++ +  + ++++L k++e+  r++R++ G+dL++L+++eLqqLe+ Le++l+++  +K e ++eqi++l+kk  +l een++Lr+++
  XP_020692711.1  76 LSKQDQPSNDLQLENSDYERLSKQLEEANRQLRNMRGDDLHDLTIEELQQLEKTLETGLRRVLRRKGEQIMEQINDLRKKGLQLMEENRCLRQQV 170
                     4556678888999999*****************************************************************************98 PP

           K-box  99 e 99 
                      
  XP_020692711.1 171 V 171
                     6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MAREKIQIRK INNATARQVT FSKRRRGLFK KAEELSILCD AEVGLIVFSS TGKLFEFSSS  60
SMKQIIEKQN TQSRNLSKQD QPSNDLQLEN SDYERLSKQL EEANRQLRNM RGDDLHDLTI  120
EELQQLEKTL ETGLRRVLRR KGEQIMEQIN DLRKKGLQLM EENRCLRQQV VEMSKMGKQI  180
VAESENVLHE EGQSSDSITN ISNSGNSREN DDSSDTSLRL G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.16e-84MIKC_MADS family protein