PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020692683.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 352aa    MW: 39998.1 Da    PI: 7.8971
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020692683.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.65e-14278303126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ ++++G+C+yG+ C+FaHg
  XP_020692683.1 278 FKTELCNKWQENGECPYGEHCQFAHG 303
                     79***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MQKELVSSAN VDRIEASSVS PMLFVPPDLR IPSLPYLTTG RDFTRLSPQI SNPMVSQYAV  60
SPPIQCSGNT PITQSSSPVS FEDEDPVAIE NRLYLSRLAL QYQQITDRYA YCLSQLQDAK  120
LETENISKKN TELRRANDAL YQRLSLNSAK HQYRSPMTND YPPMSLLDDH FRRLSLTEPP  180
DEASPTSVFG FQDNRHGRKF PAVDDKRLTL PKCISIRSPG YLKIHQTGGS CSESNRNIRH  240
RPTTPVMQQK VCLGGTENKD GGEAEDAVEL DVYNQGMFKT ELCNKWQENG ECPYGEHCQF  300
AHGIGELRPV IRHPRYKTEL CRMILAGDTC PYGHRCHFRH SISPHDRLLR RT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-58C3H family protein