PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020692682.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 382aa    MW: 43501.4 Da    PI: 8.4708
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020692682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.45.5e-14308333126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ ++++G+C+yG+ C+FaHg
  XP_020692682.1 308 FKTELCNKWQENGECPYGEHCQFAHG 333
                     79***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    
MKLVHKLKFV INLHLFQILQ NSPLTQSTTK MQKELVSSAN VDRIEASSVS PMLFVPPDLR  60
IPSLPYLTTG RDFTRLSPQI SNPMVSQYAV SPPIQCSGNT PITQSSSPVS FEDEDPVAIE  120
NRLYLSRLAL QYQQITDRYA YCLSQLQDAK LETENISKKN TELRRANDAL YQRLSLNSAK  180
HQYRSPMTND YPPMSLLDDH FRRLSLTEPP DEASPTSVFG FQDNRHGRKF PAVDDKRLTL  240
PKCISIRSPG YLKIHQTGGS CSESNRNIRH RPTTPVMQQK VCLGGTENKD GGEAEDAVEL  300
DVYNQGMFKT ELCNKWQENG ECPYGEHCQF AHGIGELRPV IRHPRYKTEL CRMILAGDTC  360
PYGHRCHFRH SISPHDRLLR RT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-58C3H family protein